BRADI4G44040 (Brachypodium distachyon)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		BRADI4G44040 T00406_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI4G44040.1 CCCH ZF 134 155
BRADI4G44040.1 RRM 264 323

Links

Other CCCH ZF,RRM family RBPs
Other Brachypodium distachyon RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB01G036490 Sorghum bicolor Sb01g036490 N 0.915
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.915
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.915
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.915
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.892
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.892
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.890
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.890
ppa023263m Prunus persica ppa023263m N 0.890
30169.m006471 Ricinus communis 30169.m006471 N 0.880
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.880
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.880
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.880
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.878
MDP0000243086 Malus x domestica MDP0000243086 N 0.878
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.878
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.878
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.878
SB02G043180 Sorghum bicolor Sb02g043180 N 0.878
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.878
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.878
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.878
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.878
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.869
SB08G001980 Sorghum bicolor Sb08g001980 N 0.867
MDP0000120462 Malus x domestica MDP0000120462 N 0.867
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.867
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.866
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.866
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.866
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.866
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.866
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.857
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.857
mgf014647m Mimulus guttatus mgf014647m N 0.855
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.855
MDP0000120231 Malus x domestica MDP0000120231 N 0.855
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.855
MDP0000220601 Malus x domestica MDP0000220601 N 0.855
ppa002413m Prunus persica ppa002413m N 0.855
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.854
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.854
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.843
SB05G001540 Sorghum bicolor Sb05g001540 N 0.843
MDP0000259773 Malus x domestica MDP0000259773 N 0.831
MDP0000256775 Malus x domestica MDP0000256775 N 0.831
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.828
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.819
ppa002383m Prunus persica ppa002383m N 0.800
mgf000973m Mimulus guttatus mgf000973m N 0.798
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.783
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.782
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.782
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.779
MDP0000164538 Malus x domestica MDP0000164538 N 0.776
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.770
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.770
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.770
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.767
mgf002273m Mimulus guttatus mgf002273m N 0.765
PK18074.1 Cannabis sativa PK18074.1 N 0.765
30169.m006472 Ricinus communis 30169.m006472 N 0.753
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.753
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.744
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.738
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.733
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.723
ppa003564m Prunus persica ppa003564m N 0.718
MDP0000214614 Malus x domestica MDP0000214614 N 0.718
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.714
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.713
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.711
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.711
PK01281.1 Cannabis sativa PK01281.1 N 0.706
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.702