e_gw1.136.54.1 (Physcomitrella patens)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		e_gw1.136.54.1 T00868_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.136.54.1 CCCH ZF 167 189
e_gw1.136.54.1 RRM 313 373

Links

Other CCCH ZF,RRM family RBPs
Other Physcomitrella patens RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.905
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.810
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.810
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.798
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.798
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.798
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.798
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.798
fgenesh1_pm.C_scaffold_139000002 Selaginella moellendorfii fgenesh1_pm.C_scaffold_139000002 N 0.788
MDP0000243086 Malus x domestica MDP0000243086 N 0.786
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.786
ppa023263m Prunus persica ppa023263m N 0.786
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.774
SB08G001980 Sorghum bicolor Sb08g001980 N 0.774
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.774
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.774
30169.m006471 Ricinus communis 30169.m006471 N 0.774
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.774
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.774
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.774
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.774
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.762
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.762
SB02G043180 Sorghum bicolor Sb02g043180 N 0.762
ppa002413m Prunus persica ppa002413m N 0.762
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.762
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.762
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.762
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.762
MDP0000220601 Malus x domestica MDP0000220601 N 0.762
MDP0000120231 Malus x domestica MDP0000120231 N 0.762
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.750
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.750
SB01G036490 Sorghum bicolor Sb01g036490 N 0.750
SB05G001540 Sorghum bicolor Sb05g001540 N 0.750
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.750
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.750
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.750
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.750
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.750
MDP0000120462 Malus x domestica MDP0000120462 N 0.750
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.750
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.750
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.750
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.750
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.747
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.738
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.738
MDP0000256775 Malus x domestica MDP0000256775 N 0.738
MDP0000259773 Malus x domestica MDP0000259773 N 0.738
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.738
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.733
ppa002383m Prunus persica ppa002383m N 0.733
mgf014647m Mimulus guttatus mgf014647m N 0.726
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.726
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.724
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.724
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.721
MDP0000214614 Malus x domestica MDP0000214614 N 0.718
ppa003564m Prunus persica ppa003564m N 0.718
PK20504.1 Cannabis sativa PK20504.1 N 0.718
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.714
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.713
PK18074.1 Cannabis sativa PK18074.1 N 0.709
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.701