GRMZM2G346113 (Zea mays)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		GRMZM2G346113 T01016_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G346113_P01 CCCH ZF 153 175
GRMZM2G346113_P01 RRM 278 337
GRMZM2G346113_P02 CCCH ZF 153 175
GRMZM2G346113_P02 RRM 278 337

Links

Other CCCH ZF,RRM family RBPs
Other Zea mays RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB05G001540 Sorghum bicolor Sb05g001540 N 0.976
SB08G001980 Sorghum bicolor Sb08g001980 N 0.940
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.940
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.867
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.867
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.867
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.867
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.867
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.867
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.855
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.855
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.855
ppa023263m Prunus persica ppa023263m N 0.855
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.855
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.855
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.855
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.855
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.855
MDP0000243086 Malus x domestica MDP0000243086 N 0.855
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.843
MDP0000220601 Malus x domestica MDP0000220601 N 0.843
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.843
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.843
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.833
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.833
mgf014647m Mimulus guttatus mgf014647m N 0.831
SB02G043180 Sorghum bicolor Sb02g043180 N 0.831
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.831
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.831
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.831
mgf000973m Mimulus guttatus mgf000973m N 0.824
ppa002413m Prunus persica ppa002413m N 0.821
30169.m006471 Ricinus communis 30169.m006471 N 0.821
MDP0000120231 Malus x domestica MDP0000120231 N 0.821
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.819
MDP0000259773 Malus x domestica MDP0000259773 N 0.819
MDP0000256775 Malus x domestica MDP0000256775 N 0.819
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.819
SB01G036490 Sorghum bicolor Sb01g036490 N 0.819
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.819
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.819
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.819
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.819
mgf002273m Mimulus guttatus mgf002273m N 0.812
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.810
MDP0000120462 Malus x domestica MDP0000120462 N 0.810
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.807
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.807
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.805
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.786
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.786
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.782
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.782
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.774
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.767
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.767
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.747
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.747
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.744
30169.m006472 Ricinus communis 30169.m006472 N 0.744
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.744
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.738
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.736
PK18074.1 Cannabis sativa PK18074.1 N 0.733
ppa002383m Prunus persica ppa002383m N 0.733
MDP0000164538 Malus x domestica MDP0000164538 N 0.733
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.726
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.714
ppa003564m Prunus persica ppa003564m N 0.706
MDP0000214614 Malus x domestica MDP0000214614 N 0.706
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.702
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.701
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.701