e_gw1.31.137.1 (Physcomitrella patens)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		e_gw1.31.137.1 T00876_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.31.137.1 CCCH ZF 194 212
e_gw1.31.137.1 RRM 349 408

Links

Other CCCH ZF,RRM family RBPs
Other Physcomitrella patens RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.905
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.840
fgenesh1_pm.C_scaffold_139000002 Selaginella moellendorfii fgenesh1_pm.C_scaffold_139000002 N 0.780
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.759
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.759
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.759
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.759
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.747
ppa023263m Prunus persica ppa023263m N 0.747
MDP0000243086 Malus x domestica MDP0000243086 N 0.747
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.738
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.738
ppa002413m Prunus persica ppa002413m N 0.735
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.735
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.735
SB02G043180 Sorghum bicolor Sb02g043180 N 0.735
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.735
30169.m006471 Ricinus communis 30169.m006471 N 0.735
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.735
MDP0000220601 Malus x domestica MDP0000220601 N 0.735
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.735
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.735
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.735
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.735
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.735
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.735
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.726
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.726
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.726
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.726
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.726
SB08G001980 Sorghum bicolor Sb08g001980 N 0.726
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.726
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.726
SB01G036490 Sorghum bicolor Sb01g036490 N 0.723
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.723
MDP0000120231 Malus x domestica MDP0000120231 N 0.723
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.723
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.723
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.723
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.723
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.723
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.723
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.714
MDP0000120462 Malus x domestica MDP0000120462 N 0.711
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.711
MDP0000256775 Malus x domestica MDP0000256775 N 0.711
MDP0000259773 Malus x domestica MDP0000259773 N 0.711
ppa002383m Prunus persica ppa002383m N 0.706
SB05G001540 Sorghum bicolor Sb05g001540 N 0.702
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.702
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.701