LOC_Os03g21160 (Oryza sativa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		LOC_Os03g21160 T00726_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g21160.1 CCCH ZF 232 253
LOC_Os03g21160.1 RRM 368 427
LOC_Os03g21160.2 CCCH ZF 232 253
LOC_Os03g21160.2 RRM 368 427

Links

Other CCCH ZF,RRM family RBPs
Other Oryza sativa RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 1.000
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.976
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.976
SB01G036490 Sorghum bicolor Sb01g036490 N 0.976
SB02G043180 Sorghum bicolor Sb02g043180 N 0.976
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.976
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.976
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.976
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.976
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.976
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.940
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.939
ppa023263m Prunus persica ppa023263m N 0.915
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.915
30169.m006471 Ricinus communis 30169.m006471 N 0.904
MDP0000120231 Malus x domestica MDP0000120231 N 0.904
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.904
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.902
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.902
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.902
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.902
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.902
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.902
MDP0000243086 Malus x domestica MDP0000243086 N 0.902
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.902
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.892
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.890
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.890
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.890
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.890
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.890
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.881
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.881
MDP0000120462 Malus x domestica MDP0000120462 N 0.880
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.880
ppa002413m Prunus persica ppa002413m N 0.880
mgf014647m Mimulus guttatus mgf014647m N 0.880
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.880
MDP0000220601 Malus x domestica MDP0000220601 N 0.855
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.851
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.845
MDP0000256775 Malus x domestica MDP0000256775 N 0.831
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.831
SB08G001980 Sorghum bicolor Sb08g001980 N 0.831
MDP0000259773 Malus x domestica MDP0000259773 N 0.831
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.819
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.819
ppa002383m Prunus persica ppa002383m N 0.812
SB05G001540 Sorghum bicolor Sb05g001540 N 0.807
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.802
MDP0000164538 Malus x domestica MDP0000164538 N 0.800
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.793
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.793
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.791
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.782
30169.m006472 Ricinus communis 30169.m006472 N 0.776
mgf002273m Mimulus guttatus mgf002273m N 0.776
PK18074.1 Cannabis sativa PK18074.1 N 0.776
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.776
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.770
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.770
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.767
mgf000973m Mimulus guttatus mgf000973m N 0.762
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.756
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.750
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.747
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.747
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.723
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.711
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.711
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.711
PK20504.1 Cannabis sativa PK20504.1 N 0.706
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.702