cassava9561.m1 (Manihot esculenta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		cassava9561.m1 T00854_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava9561.m1 CCCH ZF 238 259
cassava9561.m1 RRM 370 429

Links

Other CCCH ZF,RRM family RBPs
Other Manihot esculenta RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 1.000
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 1.000
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 1.000
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.976
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.963
ppa023263m Prunus persica ppa023263m N 0.915
MDP0000220601 Malus x domestica MDP0000220601 N 0.904
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.902
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.902
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.902
MDP0000243086 Malus x domestica MDP0000243086 N 0.902
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.902
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.902
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.902
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.902
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.902
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.902
SB02G043180 Sorghum bicolor Sb02g043180 N 0.902
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.890
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.890
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.880
MDP0000259773 Malus x domestica MDP0000259773 N 0.880
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.880
30169.m006471 Ricinus communis 30169.m006471 N 0.880
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.880
SB08G001980 Sorghum bicolor Sb08g001980 N 0.880
MDP0000256775 Malus x domestica MDP0000256775 N 0.880
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.880
ppa002413m Prunus persica ppa002413m N 0.880
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.878
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.878
SB01G036490 Sorghum bicolor Sb01g036490 N 0.878
MDP0000120231 Malus x domestica MDP0000120231 N 0.867
mgf014647m Mimulus guttatus mgf014647m N 0.867
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.866
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.866
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.857
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.857
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.855
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.855
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.855
MDP0000120462 Malus x domestica MDP0000120462 N 0.843
SB05G001540 Sorghum bicolor Sb05g001540 N 0.843
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.843
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.843
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.833
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.831
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.828
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.828
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.828
mgf000973m Mimulus guttatus mgf000973m N 0.821
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.795
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.791
ppa002383m Prunus persica ppa002383m N 0.788
mgf002273m Mimulus guttatus mgf002273m N 0.788
MDP0000164538 Malus x domestica MDP0000164538 N 0.788
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.779
30169.m006472 Ricinus communis 30169.m006472 N 0.776
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.770
PK18074.1 Cannabis sativa PK18074.1 N 0.765
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.765
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.756
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.750
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.747
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.747
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.747
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.744
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.735
PK20504.1 Cannabis sativa PK20504.1 N 0.718
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.711
ppa003564m Prunus persica ppa003564m N 0.706
MDP0000214614 Malus x domestica MDP0000214614 N 0.706
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.702
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.702