Glyma08g43790.1 (Glycine max)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Glyma08g43790.1 T00956_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma08g43790.1 CCCH ZF 82 107
Glyma08g43790.1 RRM 243 303

Links

Other CCCH ZF,RRM family RBPs
Other Glycine max RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.000
mgf003557m Mimulus guttatus mgf003557m N 0.724
mgf002273m Mimulus guttatus mgf002273m N 0.000
Glyma18g09020.1 Glycine max Glyma18g09020.1 N 0.954
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.770
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.000
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.000
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.000
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.000
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.000
Medtr3g077080 Medicago truncatula Medtr3g077080 N 0.793
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.000
ppa023263m Prunus persica ppa023263m N 0.000
ppa019338m Prunus persica ppa019338m N 0.816
ppa003564m Prunus persica ppa003564m N 0.000
ppa002413m Prunus persica ppa002413m N 0.000
MDP0000906147 Malus x domestica MDP0000906147 N 0.000
MDP0000243086 Malus x domestica MDP0000243086 N 0.000
MDP0000214614 Malus x domestica MDP0000214614 N 0.000
MDP0000120231 Malus x domestica MDP0000120231 N 0.000
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.000
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.000
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.759
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.770
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.759
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.000
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.000
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.000
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.000
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.000
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.000
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.701
PK20504.1 Cannabis sativa PK20504.1 N 0.713
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.000
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.000
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.000
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.770
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.000
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.000
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.000
30169.m006471 Ricinus communis 30169.m006471 N 0.000
29223.m000023 Ricinus communis 29223.m000023 N 0.000
27613.m000645 Ricinus communis 27613.m000645 N 0.000
SB08G001980 Sorghum bicolor Sb08g001980 N 0.000
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.747
PK01281.1 Cannabis sativa PK01281.1 N 0.713