zfp36 (Xenopus tropicalis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSXETG00000002899 T03629_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.852
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.852
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.852
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.852
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.852
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.852
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.852
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.852
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000006345 CCCH ZF 111 137
ENSXETP00000006345 CCCH ZF 149 175

Links

Other CCCH ZF family RBPs
Other Xenopus tropicalis RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF1 Homo sapiens ENSG00000136450 D 0.000
AAI28932 Xenopus laevis AAI28932 I 0.000
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.000
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.000
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.000
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.000
SRSF1 Sorex araneus ENSSARG00000010949 I 0.000
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.000
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.000
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.000
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.000
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.000
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.000
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.000
AAI23123 Xenopus laevis AAI23123 I 0.000
AAH42354 Xenopus laevis AAH42354 I 0.000
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.000
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.000
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.000
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.000
ISCW014398 Ixodes scapularis ISCW014398 I 0.000
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.000
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.000
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.000
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.000
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.000
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.000
Srsf1 Mus musculus ENSMUSG00000018379 I 0.000
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.000
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.000
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.000
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.000
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.000
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.000
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.000
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.000
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.000
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.000
srsf1a Danio rerio ENSDARG00000057691 I 0.000
LOC100056763 Equus caballus ENSECAG00000016654 I 0.000
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.000
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.000
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.000
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.000
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.000
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.000
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.000
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.000
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.000
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.000
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.000
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.000