LOC100392422 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000014041 T35606_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.894
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.894
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.894
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.894
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.894
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.894
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.894
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.894
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.894
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.894
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.731
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.731
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000042885 RRM 17 84
ENSCJAP00000042885 RRM 113 176

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.894
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.894
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.894
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.894
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.894
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.894
Srsf1 Mus musculus ENSMUSG00000018379 I 0.894
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.894
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.894
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.894
SRSF1 Homo sapiens ENSG00000136450 D 0.894
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.894
LOC100056763 Equus caballus ENSECAG00000016654 I 0.894
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.894
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.894
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.894
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.894
AAI28932 Xenopus laevis AAI28932 I 0.886
AAI23123 Xenopus laevis AAI23123 I 0.886
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.886
AAH42354 Xenopus laevis AAH42354 I 0.886
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.886
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.879
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.879
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.879
SRSF1 Sorex araneus ENSSARG00000010949 I 0.879
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.879
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.879
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.879
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.879
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.879
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.879
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.871
srsf1a Danio rerio ENSDARG00000057691 I 0.864
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.856
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.856
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.856
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.856
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.851
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.841
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.833
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.833
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.812
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.811
ISCW014398 Ixodes scapularis ISCW014398 I 0.780
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.780
SRSF1 Dasypus novemcinctus ENSDNOG00000011737 I 0.776
SRSF1 Felis catus ENSFCAG00000002250 I 0.776
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.765
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.758
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.750
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.750
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.742
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.742
SRSF1 Pteropus vampyrus ENSPVAG00000000519 I 0.739
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.737
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.737
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.737
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.737
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.737
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.737
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.737
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.737
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.737
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.737
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.737
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.737
SRSF9 Homo sapiens ENSG00000111786 D 0.737
Srsf9 Mus musculus ENSMUSG00000029538 I 0.737
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.737
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.737
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.735
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.729
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.729
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.727
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.727
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.722
AAEL006473 Aedes aegypti AAEL006473 I 0.720
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.720
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.720
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.720
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.720
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.716
CBN06053 Caenorhabditis brenneri CBN06053 I 0.712
CRE13382 Caenorhabditis remanei CRE13382 I 0.712
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.712
GL22249 Drosophila persimilis FBgn0159841 I 0.712
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.712
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.709
GE26323 Drosophila yakuba FBgn0243353 I 0.705
GH18077 Drosophila grimshawi FBgn0125545 I 0.705
GF16525 Drosophila ananassae FBgn0093546 I 0.705
GK13511 Drosophila willistoni FBgn0215519 I 0.705
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.705
LOAG_10275 Loa loa LOAG_10275 I 0.705
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.705
AGAP010496 Anopheles gambiae AGAP010496 I 0.705