ENSORLG00000004580 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000004580 T40120_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.948
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.948
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.948
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.948
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.948
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.948
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.948
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.948
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.948
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.948
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.743
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.743
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.743
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000005758 RRM 34 103
ENSORLP00000005758 RRM 139 202

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.978
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.978
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.948
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.948
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.948
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.948
SRSF1 Homo sapiens ENSG00000136450 D 0.948
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.948
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.948
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.948
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.948
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.948
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.948
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.948
LOC100056763 Equus caballus ENSECAG00000016654 I 0.948
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.948
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.948
Srsf1 Mus musculus ENSMUSG00000018379 I 0.948
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.948
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.948
AAH42354 Xenopus laevis AAH42354 I 0.940
AAI28932 Xenopus laevis AAI28932 I 0.940
AAI23123 Xenopus laevis AAI23123 I 0.940
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.940
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.940
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.933
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.933
srsf1a Danio rerio ENSDARG00000057691 I 0.933
SRSF1 Sorex araneus ENSSARG00000010949 I 0.933
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.933
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.933
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.933
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.933
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.933
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.933
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.933
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.918
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.910
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.910
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.903
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.903
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.874
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.858
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.851
ISCW014398 Ixodes scapularis ISCW014398 I 0.806
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.806
SRSF1 Felis catus ENSFCAG00000002250 I 0.799
SRSF1 Dasypus novemcinctus ENSDNOG00000011737 I 0.799
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.799
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.791
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.784
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.784
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.776
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.769
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.769
AAEL006473 Aedes aegypti AAEL006473 I 0.769
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.769
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.769
ENSORLG00000005314 Oryzias latipes ENSORLG00000005314 I 0.769
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.769
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.769
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.769
SRSF1 Pteropus vampyrus ENSPVAG00000000519 I 0.761
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.761
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.761
GL22249 Drosophila persimilis FBgn0159841 I 0.754
GK13511 Drosophila willistoni FBgn0215519 I 0.754
GH18077 Drosophila grimshawi FBgn0125545 I 0.754
GF16525 Drosophila ananassae FBgn0093546 I 0.754
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.754
GE26323 Drosophila yakuba FBgn0243353 I 0.754
AGAP010496 Anopheles gambiae AGAP010496 I 0.754
SRSF9 Homo sapiens ENSG00000111786 D 0.748
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.748
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.748
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.748
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.748
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.748
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.748
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.748
Srsf9 Mus musculus ENSMUSG00000029538 I 0.748
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.748
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.748
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.748
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.748
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.748
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.748
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.746
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.741
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.741
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.741
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.741
LOAG_10275 Loa loa LOAG_10275 I 0.739
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.733
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.733
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.726
Smp_185230 Schistosoma mansoni Smp_185230 I 0.726
Minc04015 Meloidogyne incognita Minc04015 I 0.719
Minc06188 Meloidogyne incognita Minc06188 I 0.719
CBN06053 Caenorhabditis brenneri CBN06053 I 0.716
CBG03563 Caenorhabditis briggsae CBG03563 I 0.716
CRE13382 Caenorhabditis remanei CRE13382 I 0.716
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.711
AAH84289 Xenopus laevis AAH84289 I 0.711
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.711
186029 Helobdella robusta 186029 I 0.709
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.709