ENSGACG00000020621 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000020621 T37584_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.932
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.932
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.932
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.932
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.932
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.932
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.932
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.932
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.932
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.932
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.769
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.769
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.769
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000027276 RRM 18 85
ENSGACP00000027276 RRM 115 178

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.932
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.932
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.932
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.932
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.932
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.932
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.932
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.932
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.932
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.932
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.932
LOC100056763 Equus caballus ENSECAG00000016654 I 0.932
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.932
Srsf1 Mus musculus ENSMUSG00000018379 I 0.932
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.932
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.932
SRSF1 Homo sapiens ENSG00000136450 D 0.932
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.924
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.924
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.924
AAI28932 Xenopus laevis AAI28932 I 0.924
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.924
srsf1a Danio rerio ENSDARG00000057691 I 0.924
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.924
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.924
AAI23123 Xenopus laevis AAI23123 I 0.924
AAH42354 Xenopus laevis AAH42354 I 0.924
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.917
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.917
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.917
SRSF1 Sorex araneus ENSSARG00000010949 I 0.917
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.917
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.917
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.917
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.917
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.917
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.903
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.902
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.902
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.894
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.887
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.886
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.848
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.841
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.833
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.826
ISCW014398 Ixodes scapularis ISCW014398 I 0.818
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.811
ENSORLG00000005314 Oryzias latipes ENSORLG00000005314 I 0.795
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.788
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.788
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.788
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.780
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.780
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.780
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.780
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.780
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.774
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.774
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.774
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.774
Srsf9 Mus musculus ENSMUSG00000029538 I 0.774
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.774
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.774
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.774
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.774
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.774
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.774
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.774
SRSF9 Homo sapiens ENSG00000111786 D 0.774
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.774
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.774
SRSF1 Dasypus novemcinctus ENSDNOG00000011737 I 0.769
SRSF1 Felis catus ENSFCAG00000002250 I 0.769
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.767
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.767
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.767
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.765
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.761
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.761
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.759
AAEL006473 Aedes aegypti AAEL006473 I 0.758
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.758
AGAP010496 Anopheles gambiae AGAP010496 I 0.750
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.750
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.750
GE26323 Drosophila yakuba FBgn0243353 I 0.742
LOAG_10275 Loa loa LOAG_10275 I 0.742
GF16525 Drosophila ananassae FBgn0093546 I 0.742
GL22249 Drosophila persimilis FBgn0159841 I 0.742
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.742
GH18077 Drosophila grimshawi FBgn0125545 I 0.742
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.742
GK13511 Drosophila willistoni FBgn0215519 I 0.742
SRSF1 Pteropus vampyrus ENSPVAG00000000519 I 0.739
Smp_185230 Schistosoma mansoni Smp_185230 I 0.729
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.729
Minc06188 Meloidogyne incognita Minc06188 I 0.729
Minc04015 Meloidogyne incognita Minc04015 I 0.729
186029 Helobdella robusta 186029 I 0.727
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.722
SRSF9 Tursiops truncatus ENSTTRG00000000145 I 0.722
CRE13382 Caenorhabditis remanei CRE13382 I 0.720
CBN06053 Caenorhabditis brenneri CBN06053 I 0.720
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.716
SRSF9 Tupaia belangeri ENSTBEG00000008499 I 0.714
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.712
AAH84289 Xenopus laevis AAH84289 I 0.709
CBG03563 Caenorhabditis briggsae CBG03563 I 0.705