LOC100400391 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000008111 T35547_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.909
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.909
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.909
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.909
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.909
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.909
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.909
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.909
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.909
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.909
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.701
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.701
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000014967 RRM 49 116
ENSCJAP00000014967 RRM 154 217

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.909
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.909
Srsf1 Mus musculus ENSMUSG00000018379 I 0.909
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.909
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.909
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.909
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.909
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.909
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.909
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.909
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.909
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.909
SRSF1 Sorex araneus ENSSARG00000010949 I 0.909
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.909
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.909
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.909
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.909
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.909
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.909
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.909
LOC100056763 Equus caballus ENSECAG00000016654 I 0.909
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.909
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.909
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.909
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.909
SRSF1 Homo sapiens ENSG00000136450 D 0.909
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.909
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.902
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.902
AAH42354 Xenopus laevis AAH42354 I 0.902
AAI23123 Xenopus laevis AAI23123 I 0.902
AAI28932 Xenopus laevis AAI28932 I 0.902
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.894
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.894
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.886
srsf1a Danio rerio ENSDARG00000057691 I 0.879
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.864
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.864
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.864
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.858
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.856
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.848
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.820
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.811
ISCW014398 Ixodes scapularis ISCW014398 I 0.780
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.773
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.773
SRSF1 Dasypus novemcinctus ENSDNOG00000011737 I 0.761
SRSF1 Felis catus ENSFCAG00000002250 I 0.761
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.758
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.758
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.758
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.750
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.735
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.735
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.727
AGAP010496 Anopheles gambiae AGAP010496 I 0.727
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.727
SRSF1 Pteropus vampyrus ENSPVAG00000000519 I 0.724
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.720
AAEL006473 Aedes aegypti AAEL006473 I 0.720
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.720
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.720
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.720
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.712
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.712
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.712
GL22249 Drosophila persimilis FBgn0159841 I 0.712
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.707
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.707
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.707
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.707
Srsf9 Mus musculus ENSMUSG00000029538 I 0.707
SRSF9 Homo sapiens ENSG00000111786 D 0.707
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.707
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.707
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.707
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.707
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.707
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.707
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.707
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.707
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.707
GK13511 Drosophila willistoni FBgn0215519 I 0.705
GH18077 Drosophila grimshawi FBgn0125545 I 0.705
GF16525 Drosophila ananassae FBgn0093546 I 0.705
GE26323 Drosophila yakuba FBgn0243353 I 0.705
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.701