SRSF1 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000017058 T42370_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.939
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.939
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.939
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.939
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.939
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.939
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.939
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.939
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.939
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.939
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.739
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.739
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000043699 RRM 38 105
ENSTRUP00000043699 RRM 138 201
ENSTRUP00000043700 RRM 17 84
ENSTRUP00000043700 RRM 117 180

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

105 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.962
LOC100056763 Equus caballus ENSECAG00000016654 I 0.939
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.939
SRSF1 Homo sapiens ENSG00000136450 D 0.939
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.939
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.939
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.939
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.939
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.939
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.939
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.939
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.939
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.939
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.939
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.939
Srsf1 Mus musculus ENSMUSG00000018379 I 0.939
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.939
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.939
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.939
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.939
AAI23123 Xenopus laevis AAI23123 I 0.932
AAI28932 Xenopus laevis AAI28932 I 0.932
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.932
AAH42354 Xenopus laevis AAH42354 I 0.932
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.932
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.924
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.924
SRSF1 Sorex araneus ENSSARG00000010949 I 0.924
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.924
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.924
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.924
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.924
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.924
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.924
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.917
srsf1a Danio rerio ENSDARG00000057691 I 0.917
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.917
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.910
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.909
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.909
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.902
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.894
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.856
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.841
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.833
ISCW014398 Ixodes scapularis ISCW014398 I 0.826
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.803
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.795
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.795
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.795
SRSF1 Dasypus novemcinctus ENSDNOG00000011737 I 0.791
SRSF1 Felis catus ENSFCAG00000002250 I 0.791
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.788
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.788
AAEL006473 Aedes aegypti AAEL006473 I 0.780
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.780
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.780
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.780
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.773
AGAP010496 Anopheles gambiae AGAP010496 I 0.773
GL22249 Drosophila persimilis FBgn0159841 I 0.765
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.765
GE26323 Drosophila yakuba FBgn0243353 I 0.765
GF16525 Drosophila ananassae FBgn0093546 I 0.765
GK13511 Drosophila willistoni FBgn0215519 I 0.765
ENSORLG00000005314 Oryzias latipes ENSORLG00000005314 I 0.765
GH18077 Drosophila grimshawi FBgn0125545 I 0.765
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.758
SRSF1 Pteropus vampyrus ENSPVAG00000000519 I 0.754
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.750
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.750
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.744
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.744
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.744
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.744
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.744
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.744
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.744
SRSF9 Homo sapiens ENSG00000111786 D 0.744
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.744
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.744
Srsf9 Mus musculus ENSMUSG00000029538 I 0.744
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.744
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.744
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.744
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.744
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.742
186029 Helobdella robusta 186029 I 0.742
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.737
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.737
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.737
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.735
LOAG_10275 Loa loa LOAG_10275 I 0.735
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.731
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.729
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.724
Smp_185230 Schistosoma mansoni Smp_185230 I 0.722
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.722
Minc04015 Meloidogyne incognita Minc04015 I 0.714
Minc06188 Meloidogyne incognita Minc06188 I 0.714
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.714
CRE13382 Caenorhabditis remanei CRE13382 I 0.705
CBN06053 Caenorhabditis brenneri CBN06053 I 0.705
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.701