ENSGACG00000011094 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000011094 T37485_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.939
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.939
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.939
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.939
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.939
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.939
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.939
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.939
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.939
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.939
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.739
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.739
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000014666 RRM 17 84
ENSGACP00000014666 RRM 120 182

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.962
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.962
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.955
srsf1a Danio rerio ENSDARG00000057691 I 0.955
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.948
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.947
AAI23123 Xenopus laevis AAI23123 I 0.947
AAH42354 Xenopus laevis AAH42354 I 0.947
AAI28932 Xenopus laevis AAI28932 I 0.947
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.947
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.947
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.947
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.947
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.947
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.947
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.947
SRSF1 Homo sapiens ENSG00000136450 D 0.947
SRSF1 Sorex araneus ENSSARG00000010949 I 0.947
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.947
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.939
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.939
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.939
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.939
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.939
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.939
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.939
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.939
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.939
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.939
Srsf1 Mus musculus ENSMUSG00000018379 I 0.939
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.939
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.939
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.939
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.939
LOC100056763 Equus caballus ENSECAG00000016654 I 0.939
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.932
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.931
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.924
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.909
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.909
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.902
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.865
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.864
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.833
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.811
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.811
ISCW014398 Ixodes scapularis ISCW014398 I 0.811
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.803
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.780
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.780
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.779
SRSF1 Felis catus ENSFCAG00000002250 I 0.776
SRSF1 Dasypus novemcinctus ENSDNOG00000011737 I 0.776
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.773
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.773
ENSORLG00000005314 Oryzias latipes ENSORLG00000005314 I 0.773
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.765
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.765
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.765
AGAP010496 Anopheles gambiae AGAP010496 I 0.765
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.758
AAEL006473 Aedes aegypti AAEL006473 I 0.758
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.758
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.750
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.750
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.750
SRSF1 Pteropus vampyrus ENSPVAG00000000519 I 0.746
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.744
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.744
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.744
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.744
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.744
SRSF9 Homo sapiens ENSG00000111786 D 0.744
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.744
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.744
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.744
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.744
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.744
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.744
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.744
Srsf9 Mus musculus ENSMUSG00000029538 I 0.744
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.744
LOAG_10275 Loa loa LOAG_10275 I 0.742
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.742
GL22249 Drosophila persimilis FBgn0159841 I 0.742
GF16525 Drosophila ananassae FBgn0093546 I 0.742
GH18077 Drosophila grimshawi FBgn0125545 I 0.742
GK13511 Drosophila willistoni FBgn0215519 I 0.742
GE26323 Drosophila yakuba FBgn0243353 I 0.742
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.737
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.737
Smp_185230 Schistosoma mansoni Smp_185230 I 0.737
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.737
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.737
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.731
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.729
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.724
CRE13382 Caenorhabditis remanei CRE13382 I 0.720
CBG03563 Caenorhabditis briggsae CBG03563 I 0.720
CBN06053 Caenorhabditis brenneri CBN06053 I 0.720
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.714
186029 Helobdella robusta 186029 I 0.712
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.712
AAH84289 Xenopus laevis AAH84289 I 0.709
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.709
Minc04015 Meloidogyne incognita Minc04015 I 0.707
Minc06188 Meloidogyne incognita Minc06188 I 0.707