srsf1a (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000057691 T36181_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.970
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.970
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.970
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.970
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.970
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.970
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.970
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.970
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.970
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.970
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.769
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.769
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.769
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000074862 RRM 17 84
ENSDARP00000074862 RRM 122 185
ENSDARP00000074866 RRM 17 84
ENSDARP00000074866 RRM 132 195

Links

Other RRM family RBPs
Other Danio rerio RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.985
AAH42354 Xenopus laevis AAH42354 I 0.977
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.977
AAI23123 Xenopus laevis AAI23123 I 0.977
AAI28932 Xenopus laevis AAI28932 I 0.977
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.970
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.970
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.970
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.970
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.970
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.970
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.970
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.970
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.970
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.970
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.970
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.970
LOC100056763 Equus caballus ENSECAG00000016654 I 0.970
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.970
Srsf1 Mus musculus ENSMUSG00000018379 I 0.970
SRSF1 Homo sapiens ENSG00000136450 D 0.970
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.970
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.962
SRSF1 Sorex araneus ENSSARG00000010949 I 0.955
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.955
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.955
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.955
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.955
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.955
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.955
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.955
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.955
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.955
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.947
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.947
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.939
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.933
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.932
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.924
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.924
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.917
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.880
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.879
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.864
ISCW014398 Ixodes scapularis ISCW014398 I 0.856
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.848
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.833
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.826
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.818
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.818
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.811
SRSF1 Dasypus novemcinctus ENSDNOG00000011737 I 0.806
SRSF1 Felis catus ENSFCAG00000002250 I 0.806
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.803
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.803
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.795
ENSORLG00000005314 Oryzias latipes ENSORLG00000005314 I 0.795
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.795
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.780
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.780
AAEL006473 Aedes aegypti AAEL006473 I 0.780
SRSF1 Pteropus vampyrus ENSPVAG00000000519 I 0.776
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.774
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.774
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.774
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.774
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.774
SRSF9 Homo sapiens ENSG00000111786 D 0.774
Srsf9 Mus musculus ENSMUSG00000029538 I 0.774
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.774
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.774
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.774
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.774
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.774
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.774
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.774
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.774
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.773
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.773
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.773
GL22249 Drosophila persimilis FBgn0159841 I 0.773
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.773
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.767
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.767
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.767
CBN06053 Caenorhabditis brenneri CBN06053 I 0.765
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.765
GH18077 Drosophila grimshawi FBgn0125545 I 0.765
CRE13382 Caenorhabditis remanei CRE13382 I 0.765
GK13511 Drosophila willistoni FBgn0215519 I 0.765
AGAP010496 Anopheles gambiae AGAP010496 I 0.765
LOAG_10275 Loa loa LOAG_10275 I 0.765
GE26323 Drosophila yakuba FBgn0243353 I 0.765
GF16525 Drosophila ananassae FBgn0093546 I 0.765
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.761
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.759
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.759
Smp_185230 Schistosoma mansoni Smp_185230 I 0.759
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.758
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.754
CBG03563 Caenorhabditis briggsae CBG03563 I 0.750
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.744
CJA01159 Caenorhabditis japonica CJA01159 I 0.742
186029 Helobdella robusta 186029 I 0.742
Minc06188 Meloidogyne incognita Minc06188 I 0.729
Minc04015 Meloidogyne incognita Minc04015 I 0.729
AAH84289 Xenopus laevis AAH84289 I 0.724
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.724
SRSF9 Tursiops truncatus ENSTTRG00000000145 I 0.722
SRSF9 Tupaia belangeri ENSTBEG00000008499 I 0.714
97475 Helobdella robusta 97475 N 0.705