CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA29053
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA29053
T09801_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA29053
CCHC ZF
207
224
NKCFRCGGVGHMVRQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
58 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA23650
Caenorhabditis japonica
CJA23650
N
0.833
CJA23492
Caenorhabditis japonica
CJA23492
N
0.889
CJA23027
Caenorhabditis japonica
CJA23027
N
0.889
CJA22105
Caenorhabditis japonica
CJA22105
N
0.889
CJA21786
Caenorhabditis japonica
CJA21786
N
0.833
CJA21290
Caenorhabditis japonica
CJA21290
N
0.889
CJA21076
Caenorhabditis japonica
CJA21076
N
0.889
CJA19647
Caenorhabditis japonica
CJA19647
N
0.889
CJA18651
Caenorhabditis japonica
CJA18651
N
0.889
CJA23793
Caenorhabditis japonica
CJA23793
N
0.833
CJA23880
Caenorhabditis japonica
CJA23880
N
0.833
CJA24356
Caenorhabditis japonica
CJA24356
N
0.889
CJA28132
Caenorhabditis japonica
CJA28132
N
0.944
CJA28002
Caenorhabditis japonica
CJA28002
N
0.722
CJA27741
Caenorhabditis japonica
CJA27741
N
0.889
CJA27243
Caenorhabditis japonica
CJA27243
N
0.833
CJA26989
Caenorhabditis japonica
CJA26989
N
0.778
CJA26568
Caenorhabditis japonica
CJA26568
N
0.000
CJA26146
Caenorhabditis japonica
CJA26146
N
0.889
CJA25140
Caenorhabditis japonica
CJA25140
N
0.889
CJA24410
Caenorhabditis japonica
CJA24410
N
0.889
CJA18092
Caenorhabditis japonica
CJA18092
N
0.889
CJA17448
Caenorhabditis japonica
CJA17448
N
0.889
CJA05850
Caenorhabditis japonica
CJA05850
N
0.000
CJA05814
Caenorhabditis japonica
CJA05814
N
0.889
CJA05078
Caenorhabditis japonica
CJA05078
N
0.833
CJA04336
Caenorhabditis japonica
CJA04336
N
0.722
CJA03777
Caenorhabditis japonica
CJA03777
N
0.889
CJA02757
Caenorhabditis japonica
CJA02757
N
0.722
CJA02670
Caenorhabditis japonica
CJA02670
N
0.833
CJA00525
Caenorhabditis japonica
CJA00525
N
0.722
CJA00142
Caenorhabditis japonica
CJA00142
N
0.889
CJA07934
Caenorhabditis japonica
CJA07934
N
0.833
CJA10177
Caenorhabditis japonica
CJA10177
N
0.833
CJA10256
Caenorhabditis japonica
CJA10256
N
0.833
CJA17240
Caenorhabditis japonica
CJA17240
N
0.833
CJA15515
Caenorhabditis japonica
CJA15515
N
0.722
CJA15447
Caenorhabditis japonica
CJA15447
N
0.778
CJA13676
Caenorhabditis japonica
CJA13676
N
0.833
CJA13245
Caenorhabditis japonica
CJA13245
N
0.889
CJA13217
Caenorhabditis japonica
CJA13217
N
0.722
CJA13138
Caenorhabditis japonica
CJA13138
N
0.889
CJA12763
Caenorhabditis japonica
CJA12763
N
0.833
CJA11030
Caenorhabditis japonica
CJA11030
N
0.833
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.778