CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP3
(
Canis familiaris
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSCAFG00000011907
T18470_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000010187
KH
15
75
TIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI
ENSCAFP00000010187
KH
99
162
TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI
ENSCAFP00000017524
KH
15
75
TIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI
ENSCAFP00000017524
KH
99
162
TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI
Links
Other
KH
family RBPs
Other
Canis familiaris
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK23881.1
Cannabis sativa
PK23881.1
N
0.000
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.000
Glyma09g38650.1
Glycine max
Glyma09g38650.1
N
0.000
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.000
Glyma18g47660.1
Glycine max
Glyma18g47660.1
N
0.000
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.000
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.000
mgf007299m
Mimulus guttatus
mgf007299m
N
0.000
GRMZM2G087032
Zea mays
GRMZM2G087032
N
0.000
GRMZM2G100794
Zea mays
GRMZM2G100794
N
0.000
GRMZM2G107491
Zea mays
GRMZM2G107491
N
0.000
GRMZM2G146514
Zea mays
GRMZM2G146514
N
0.000
Medtr7g089530
Medicago truncatula
Medtr7g089530
N
0.000
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.000
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.000
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.000
30128.m009030
Ricinus communis
30128.m009030
N
0.000
ZFN1
Arabidopsis thaliana
AT3G02830-TAIR-G
N
0.000
ZFN3
Arabidopsis thaliana
AT5G16540-TAIR-G
N
0.000
BGIOSIBCE036312
Oryza indica
BGIOSIBCE036312
N
0.000
BRADI2G58770
Brachypodium distachyon
BRADI2G58770
N
0.000
BRADI4G08050
Brachypodium distachyon
BRADI4G08050
N
0.000
BRADI4G19010
Brachypodium distachyon
BRADI4G19010
N
0.000
XM_002882207.1
Arabidopsis lyrata
fgenesh2_kg.3__226__AT3G02830.1
N
0.000
XM_002871677.1
Arabidopsis lyrata
fgenesh2_kg.6__1644__AT5G16540.1
N
0.000
LOC_Os01g68860
Oryza sativa
LOC_Os01g68860
N
0.000
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.000
LOC_Os12g21700
Oryza sativa
LOC_Os12g21700
N
0.000
Sb03g043810
Sorghum bicolor
Sb03g043810
N
0.000
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.000
ppa005813m
Prunus persica
ppa005813m
N
0.000