Pum1 (Mus musculus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSMUSG00000028580 T24234_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.993
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.993
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.890
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.890
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.890
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.890
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.890
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.784
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.784
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.784
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.784
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.784
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.784
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.784
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000030315 PUF 849 883
ENSMUSP00000030315 PUF 885 917
ENSMUSP00000030315 PUF 921 952
ENSMUSP00000030315 PUF 959 993
ENSMUSP00000030315 PUF 995 1029
ENSMUSP00000030315 PUF 1031 1065
ENSMUSP00000030315 PUF 1067 1097
ENSMUSP00000030315 PUF 1113 1144
ENSMUSP00000095474 PUF 848 882
ENSMUSP00000095474 PUF 884 916
ENSMUSP00000095474 PUF 920 951
ENSMUSP00000095474 PUF 958 992
ENSMUSP00000095474 PUF 994 1028
ENSMUSP00000095474 PUF 1030 1064
ENSMUSP00000095474 PUF 1066 1096
ENSMUSP00000095474 PUF 1112 1143
ENSMUSP00000095475 PUF 770 804
ENSMUSP00000095475 PUF 806 838
ENSMUSP00000095475 PUF 842 876
ENSMUSP00000095475 PUF 878 912
ENSMUSP00000095475 PUF 914 948
ENSMUSP00000095475 PUF 950 984
ENSMUSP00000095475 PUF 986 1016
ENSMUSP00000095475 PUF 1032 1063
ENSMUSP00000095476 PUF 848 882
ENSMUSP00000095476 PUF 884 916
ENSMUSP00000095476 PUF 920 954
ENSMUSP00000095476 PUF 956 990
ENSMUSP00000095476 PUF 992 1026
ENSMUSP00000095476 PUF 1028 1062
ENSMUSP00000095476 PUF 1064 1094
ENSMUSP00000095476 PUF 1110 1141
ENSMUSP00000101612 PUF 606 640
ENSMUSP00000101612 PUF 642 674
ENSMUSP00000101612 PUF 678 712
ENSMUSP00000101612 PUF 714 748
ENSMUSP00000101612 PUF 750 784
ENSMUSP00000101612 PUF 786 820
ENSMUSP00000101612 PUF 822 852
ENSMUSP00000101612 PUF 868 899
ENSMUSP00000101613 PUF 752 786
ENSMUSP00000101613 PUF 788 820
ENSMUSP00000101613 PUF 824 855
ENSMUSP00000101613 PUF 862 896
ENSMUSP00000101613 PUF 898 932
ENSMUSP00000101613 PUF 934 968
ENSMUSP00000101613 PUF 970 1000
ENSMUSP00000101613 PUF 1016 1047

Links

Other PUF family RBPs
Other Mus musculus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Hrb87F Drosophila melanogaster FBgn0004237 D 0.000
Hrb98DE Drosophila melanogaster FBgn0001215 D 0.000
GM16385 Drosophila sechellia FBgn0171300 I 0.000
GM25918 Drosophila sechellia FBgn0180774 I 0.000
GD21374 Drosophila simulans FBgn0192810 I 0.000
GJ22934 Drosophila virilis FBgn0210037 I 0.000
GJ23111 Drosophila virilis FBgn0210213 I 0.000
GK12096 Drosophila willistoni FBgn0214107 I 0.000
CpipJ_CPIJ001612 Culex pipiens CpipJ_CPIJ001612 I 0.000
GK13334 Drosophila willistoni FBgn0215343 I 0.000
GE23791 Drosophila yakuba FBgn0240946 I 0.000
GE24426 Drosophila yakuba FBgn0241543 I 0.000
GA26465-RA Drosophila pseudoobscura FBgn0247839 I 0.000
GA26796-RA Drosophila pseudoobscura FBgn0248169 I 0.000
GL13791 Drosophila persimilis FBgn0151396 I 0.000
GI10692 Drosophila mojavensis FBgn0133456 I 0.000
amel4_ncbi_hmm27519 Apis mellifera amel4_ncbi_hmm27519 I 0.000
nasonia_NCBI_hmm916274 Nasonia vitripennis nasonia_NCBI_hmm916274 I 0.000
AAEL010467 Aedes aegypti AAEL010467 I 0.000
AGAP002374 Anopheles gambiae AGAP002374 I 0.000
CPIJ001612 Culex quinquefasciatus CPIJ001612 I 0.000
GF18582 Drosophila ananassae FBgn0095600 I 0.000
GG11603 Drosophila erecta FBgn0103900 I 0.000
GG17033 Drosophila erecta FBgn0109261 I 0.000
GH17116 Drosophila grimshawi FBgn0124586 I 0.000
GH19058 Drosophila grimshawi FBgn0126525 I 0.000
GI10577 Drosophila mojavensis FBgn0133341 I 0.000
BGIBMGA006405 Bombyx mori BGIBMGA006405 I 0.000
PASA_GEN_6200011 Daphnia pulex PASA_GEN_6200011 N 0.000