CPIJ001612 (Culex quinquefasciatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CPIJ001612 T34200_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb87F
M029_0.6 		Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00029 		0.771
Hrb98DE
M093_0.6 		Drosophila melanogaster RGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00096 		0.743
Hrb98DE
M092_0.6 		Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00095 		0.743
Hrb98DE
M091_0.6 		Drosophila melanogaster GKUAGGK RNAcompete
Ray et al.(2013)
RNCMPT00094 		0.743
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CPIJ001612-PA RRM 26 95
CPIJ001612-PA RRM 117 186

Links

Other RRM family RBPs
Other Culex quinquefasciatus RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_001377567.1 Monodelphis domestica ENSMODG00000008794 N 0.000
SLTM Pan troglodytes ENSPTRG00000007121 N 0.000
SAFB2 Pan troglodytes ENSPTRG00000010334 N 0.000
SAFB Pan troglodytes ENSPTRG00000010335 N 0.000
SAFB Pteropus vampyrus ENSPVAG00000004913 N 0.000
SLTM Pteropus vampyrus ENSPVAG00000015056 N 0.000
Sltm Rattus norvegicus ENSRNOG00000013708 N 0.000
SAFB2 Sorex araneus ENSSARG00000000649 N 0.000
SAFB Sorex araneus ENSSARG00000010475 N 0.000
ENSSSCG00000004591 Sus scrofa ENSSSCG00000004591 N 0.000
ENSSSCG00000004592 Sus scrofa ENSSSCG00000004592 N 0.000
ENSSSCG00000013523 Sus scrofa ENSSSCG00000013523 N 0.000
SAFB2 Spermophilus tridecemlineatus ENSSTOG00000002758 N 0.000
SLTM Tupaia belangeri ENSTBEG00000000945 N 0.000
SAFB-1 Taeniopygia guttata ENSTGUG00000000489 N 0.000
ENSPPYG00000009428 Pongo pygmaeus ENSPPYG00000009428 N 0.000
ENSPPYG00000009427 Pongo pygmaeus ENSPPYG00000009427 N 0.000
ENSPPYG00000006515 Pongo pygmaeus ENSPPYG00000006515 N 0.000
Sltm Mus musculus ENSMUSG00000032212 N 0.000
Safb2 Mus musculus ENSMUSG00000042625 N 0.000
Safb Mus musculus ENSMUSG00000071054 N 0.000
SLTM Ornithorhynchus anatinus ENSOANG00000012311 N 0.000
ENSOANG00000013644 Ornithorhynchus anatinus ENSOANG00000013644 N 0.000
SAFB2 Oryctolagus cuniculus ENSOCUG00000001592 N 0.000
SLTM Oryctolagus cuniculus ENSOCUG00000003327 N 0.000
SAFB Oryctolagus cuniculus ENSOCUG00000014628 N 0.000
SAFB2 Otolemur garnettii ENSOGAG00000006855 N 0.000
SLTM Otolemur garnettii ENSOGAG00000011297 N 0.000
SAFB Ochotona princeps ENSOPRG00000011561 N 0.000
SLTM Oryzias latipes ENSORLG00000008161 N 0.000
SAFB Oryzias latipes ENSORLG00000016989 N 0.000
SAFB2 Procavia capensis ENSPCAG00000006352 N 0.000
SAFB-2 Taeniopygia guttata ENSTGUG00000000502 N 0.000
SLTM Taeniopygia guttata ENSTGUG00000006017 N 0.000
ENSTNIG00000015470 Tetraodon nigroviridis ENSTNIG00000015470 N 0.000
GK14110 Drosophila willistoni FBgn0216116 N 0.000
GE23518 Drosophila yakuba FBgn0240697 N 0.000
GA26852-RA Drosophila pseudoobscura FBgn0248225 N 0.000
PHUM451590 Pediculus humanus PHUM451590 N 0.000
168846 Helobdella robusta 168846 N 0.000
estExt_fgenesh1_pg.C_1060073 Nematostella vectensis estExt_fgenesh1_pg.C_1060073 N 0.000
estExt_fgenesh2_pg.C_3630023 Branchiostoma floridae estExt_fgenesh2_pg.C_3630023 N 0.000
estExt_fgenesh2_pg.C_sca_50258 Lottia gigantea estExt_fgenesh2_pg.C_sca_50258 N 0.000
fgenesh1_pm.C_scaffold_151000005 Capitella teleta fgenesh1_pm.C_scaffold_151000005 N 0.000
NCBI_GNO_7700035 Daphnia pulex NCBI_GNO_7700035 N 0.000
Ame_R015170 Ailuropoda melanoleuca Ame_R015170 N 0.000
Ame_R016388 Ailuropoda melanoleuca Ame_R016388 N 0.000
Ame_R016389 Ailuropoda melanoleuca Ame_R016389 N 0.000
AAI00172 Xenopus laevis AAI00172 N 0.000
GJ23544 Drosophila virilis FBgn0210641 N 0.000
GD21133 Drosophila simulans FBgn0192585 N 0.000
GM26630 Drosophila sechellia FBgn0181483 N 0.000
SAFB Takifugu rubripes ENSTRUG00000003567 N 0.000
SAFB Tarsius syrichta ENSTSYG00000001851 N 0.000
SLTM Tursiops truncatus ENSTTRG00000005246 N 0.000
SAFB2 Tursiops truncatus ENSTTRG00000013585 N 0.000
SAFB Tursiops truncatus ENSTTRG00000013588 N 0.000
SLTM Vicugna pacos ENSVPAG00000008606 N 0.000
SAFB Vicugna pacos ENSVPAG00000012043 N 0.000
sltm Xenopus tropicalis ENSXETG00000010840 N 0.000
CG6995 Drosophila melanogaster FBgn0039229 N 0.000
GF16243 Drosophila ananassae FBgn0093265 N 0.000
GG11323 Drosophila erecta FBgn0103624 N 0.000
GH19115 Drosophila grimshawi FBgn0126582 N 0.000
GI23570 Drosophila mojavensis FBgn0146296 N 0.000
GL13631 Drosophila persimilis FBgn0151236 N 0.000
Q498L2 Xenopus laevis Q498L2 N 0.000
ENSMODG00000001236 Monodelphis domestica ENSMODG00000001236 N 0.000
CpipJ_CPIJ012814 Culex pipiens CpipJ_CPIJ012814 N 0.000
SAFB2 Canis familiaris ENSCAFG00000018814 N 0.000
SLTM Choloepus hoffmanni ENSCHOG00000001125 N 0.000
SAFB Callithrix jacchus ENSCJAG00000017081 N 0.000
SAFB2 Callithrix jacchus ENSCJAG00000017205 N 0.000
SLTM Callithrix jacchus ENSCJAG00000020395 N 0.000
SAFB2 Cavia porcellus ENSCPOG00000011394 N 0.000
SLTM Cavia porcellus ENSCPOG00000026109 N 0.000
SAFB Cavia porcellus ENSCPOG00000026322 N 0.000
ENSDARG00000017150 Danio rerio ENSDARG00000017150 N 0.000
safb Danio rerio ENSDARG00000020467 N 0.000
SLTM Dasypus novemcinctus ENSDNOG00000002975 N 0.000
SAFB Dasypus novemcinctus ENSDNOG00000015746 N 0.000
Sltm Dipodomys ordii ENSDORG00000007463 N 0.000
Safb2 Dipodomys ordii ENSDORG00000016199 N 0.000
SAFB Canis familiaris ENSCAFG00000018803 N 0.000
SLTM Canis familiaris ENSCAFG00000016586 N 0.000
A7E314_BOVIN Bos taurus ENSBTAG00000035585 N 0.000
amel4_ncbi_hmm13354 Apis mellifera amel4_ncbi_hmm13354 N 0.000
DGIL_AUG5s7140g4t1 Acyrtosiphon pisum DGIL_AUG5s7140g4t1 N 0.000
DGIL_AUG5s8592g2t1 Acyrtosiphon pisum DGIL_AUG5s8592g2t1 N 0.000
nasonia_NCBI_hmm598374 Nasonia vitripennis nasonia_NCBI_hmm598374 N 0.000
AAEL001352 Aedes aegypti AAEL001352 N 0.000
AGAP001298 Anopheles gambiae AGAP001298 N 0.000
CPIJ012814 Culex quinquefasciatus CPIJ012814 N 0.000
SLTM Anolis carolinensis ENSACAG00000015120 N 0.000
ENSACAG00000016893 Anolis carolinensis ENSACAG00000016893 N 0.000
ENSACAG00000016928 Anolis carolinensis ENSACAG00000016928 N 0.000
SAFB2 Bos taurus ENSBTAG00000001790 N 0.000
ENSBTAG00000007875 Bos taurus ENSBTAG00000007875 N 0.000
SLTM Bos taurus ENSBTAG00000011319 N 0.000
LOC787645 Bos taurus ENSBTAG00000035584 N 0.000
Safb Dipodomys ordii ENSDORG00000016200 N 0.000
LOC100068259 Equus caballus ENSECAG00000011267 N 0.000
LOC100064953 Equus caballus ENSECAG00000018659 N 0.000
SAFB2 Loxodonta africana ENSLAFG00000003836 N 0.000
SAFB Loxodonta africana ENSLAFG00000003840 N 0.000
SLTM Loxodonta africana ENSLAFG00000017922 N 0.000
SAFB2 Macropus eugenii ENSMEUG00000002456 N 0.000
ENSMGAG00000001051 Meleagris gallopavo ENSMGAG00000001051 N 0.000
ENSMGAG00000001101 Meleagris gallopavo ENSMGAG00000001101 N 0.000
SLTM Meleagris gallopavo ENSMGAG00000005313 N 0.000
SAFB Microcebus murinus ENSMICG00000008739 N 0.000
SLTM Microcebus murinus ENSMICG00000013069 N 0.000
SAFB2 Myotis lucifugus ENSMLUG00000001050 N 0.000
SAFB Myotis lucifugus ENSMLUG00000001081 N 0.000
SAFB2 Macaca mulatta ENSMMUG00000017968 N 0.000
SAFB Macaca mulatta ENSMMUG00000017970 N 0.000
SLTM Macaca mulatta ENSMMUG00000022200 N 0.000
SAFB Gorilla gorilla ENSGGOG00000015109 N 0.000
SAFB2 Gorilla gorilla ENSGGOG00000015093 N 0.000
SAFB2 Gallus gallus ENSGALG00000013365 N 0.000
LOC100064922 Equus caballus ENSECAG00000018978 N 0.000
SLTM Erinaceus europaeus ENSEEUG00000000580 N 0.000
SLTM Echinops telfairi ENSETEG00000008003 N 0.000
SAFB2 Echinops telfairi ENSETEG00000016756 N 0.000
SAFB Echinops telfairi ENSETEG00000018679 N 0.000
SLTM Felis catus ENSFCAG00000004826 N 0.000
SAFB2 Felis catus ENSFCAG00000011834 N 0.000
SAFB Felis catus ENSFCAG00000011835 N 0.000
SAFB2 Homo sapiens ENSG00000130254 N 0.000
SLTM Homo sapiens ENSG00000137776 N 0.000
SAFB Homo sapiens ENSG00000160633 N 0.000
SAFB Gasterosteus aculeatus ENSGACG00000011385 N 0.000
SAFB2 Gallus gallus ENSGALG00000001948 N 0.000
SLTM Gallus gallus ENSGALG00000004192 N 0.000
SAFB2 Monodelphis domestica ENSMODG00000001178 N 0.000