CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RALYL
(
Choloepus hoffmanni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCHOG00000013228
T35340_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
0.812
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
0.797
HNRNPCL1
M158_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00167
0.750
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCHOP00000011719
RRM
23
86
VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLD
Links
Other
RRM
family RBPs
Other
Choloepus hoffmanni
RBPs
129 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PITG_22277
Phytophthora infestans
PITG_22277
N
0.000
LOC_Os11g19910
Oryza sativa
LOC_Os11g19910
N
0.000
LOC_Os11g38820
Oryza sativa
LOC_Os11g38820
N
0.000
LOC_Os11g39950
Oryza sativa
LOC_Os11g39950
N
0.000
LOC_Os12g33260
Oryza sativa
LOC_Os12g33260
N
0.000
Sb04g021900
Sorghum bicolor
Sb04g021900
N
0.000
Genemark.10526_g
Serpula lacrymans
Genemark.10526_g
N
0.000
Genemark.10975_g
Serpula lacrymans
Genemark.10975_g
N
0.000
Genemark.3014_g
Serpula lacrymans
Genemark.3014_g
N
0.000
Genemark.4174_g
Serpula lacrymans
Genemark.4174_g
N
0.000
LOC_Os11g18620
Oryza sativa
LOC_Os11g18620
N
0.000
LOC_Os10g06430
Oryza sativa
LOC_Os10g06430
N
0.000
CJA05016
Caenorhabditis japonica
CJA05016
N
0.000
CJA17358
Caenorhabditis japonica
CJA17358
N
0.000
CJA19095
Caenorhabditis japonica
CJA19095
N
0.000
LOC_Os02g44180
Oryza sativa
LOC_Os02g44180
N
0.000
LOC_Os03g44360
Oryza sativa
LOC_Os03g44360
N
0.000
LOC_Os04g43950
Oryza sativa
LOC_Os04g43950
N
0.000
LOC_Os06g31350
Oryza sativa
LOC_Os06g31350
N
0.000
LOC_Os07g15080
Oryza sativa
LOC_Os07g15080
N
0.000
LOC_Os07g17090
Oryza sativa
LOC_Os07g17090
N
0.000
Genemark.8306_g
Serpula lacrymans
Genemark.8306_g
N
0.000