PABPN1L (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000025902 T38108_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000028069 RRM 117 186

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1 Homo sapiens ENSG00000100836 D 0.729
Q9DDY9 Xenopus laevis Q9DDY9 I 0.714
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.718
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.718
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.729
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.729
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.843
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.843
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.800
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.729
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.800
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.729
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.718
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.857
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.729
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.845
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.714
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.700
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.714
Q6TY21 Xenopus laevis Q6TY21 I 0.729
AAR26263 Xenopus laevis AAR26263 I 0.729
AAR26262 Xenopus laevis AAR26262 I 0.714
AAI70311 Xenopus laevis AAI70311 I 0.729
AAI70309 Xenopus laevis AAI70309 I 0.729
AAH73657 Xenopus laevis AAH73657 I 0.714
AAH45063 Xenopus laevis AAH45063 I 0.714
AAG36902 Xenopus laevis AAG36902 I 0.714
2JWN_B Xenopus laevis 2JWN_B I 0.729
2JWN_A Xenopus laevis 2JWN_A I 0.729
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.729
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.704
PHUM037550 Pediculus humanus PHUM037550 I 0.700
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.729
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.800
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.718
PABPN1L Homo sapiens ENSG00000205022 I 0.800
LOC100055599 Equus caballus ENSECAG00000011652 I 0.729
LOC100051357 Equus caballus ENSECAG00000000378 I 0.817
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.729
pabpn1 Danio rerio ENSDARG00000045373 I 0.732
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.775
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.729
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.729
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.729
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.729
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.729
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.800
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.700
PABPN1 Gallus gallus ENSGALG00000006242 I 0.800
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.729
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.729
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.729
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.714
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.729
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.800
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.729
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.800
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.729
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.714
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.729
PABPN1L Microcebus murinus ENSMICG00000006298 N 0.743
Q804A5 Xenopus laevis Q804A5 N 0.729
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.829
Pabpn1l Mus musculus ENSMUSG00000069867 N 0.814
PABPN1L Sus scrofa ENSSSCG00000002647 N 0.817
PABPN1L Myotis lucifugus ENSMLUG00000003228 N 0.757
AAO33927 Xenopus laevis AAO33927 N 0.729
PABPN1L Bos taurus ENSBTAG00000023752 N 0.843
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.800
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.700