CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPC
(
Macropus eugenii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMEUG00000010928
T38239_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
0.984
HNRNPCL1
M158_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00167
0.891
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
0.766
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMEUP00000009974
RRM
18
81
VFIGNLNTLVVKKTDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLD
Links
Other
RRM
family RBPs
Other
Macropus eugenii
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK10564.1
Cannabis sativa
PK10564.1
I
0.000
MDP0000663428
Malus x domestica
MDP0000663428
I
0.000
MDP0000155133
Malus x domestica
MDP0000155133
I
0.000
LjSGA_031492.1
Lotus japonicus
LjSGA_031492.1
I
0.000
Medtr3g094740
Medicago truncatula
Medtr3g094740
I
0.000
Medtr3g094730
Medicago truncatula
Medtr3g094730
I
0.000
Glyma18g02820.1
Glycine max
Glyma18g02820.1
I
0.000
Glyma11g35600.1
Glycine max
Glyma11g35600.1
I
0.000
Cucsa.239320
Cucumis sativus
Cucsa.239320
I
0.000
29607.m000238
Ricinus communis
29607.m000238
I
0.000
B9HSK1_POPTR
Populus trichocarpa
POPTR_0010s19230
I
0.000
B9HHU6_POPTR
Populus trichocarpa
POPTR_0008s07250
I
0.000
XM_002881666.1
Arabidopsis lyrata
fgenesh2_kg.4__2141__AT2G40290.1
I
0.000
AT2G40290
Arabidopsis thaliana
AT2G40290-TAIR-G
I
0.000
ppa008120m
Prunus persica
ppa008120m
I
0.000
MDP0000273085
Malus x domestica
MDP0000273085
N
0.000