CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC1L
(
Ornithorhynchus anatinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOANG00000015793
T39573_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000024897
RRM
13
83
LYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIR
ENSOANP00000024897
RRM
101
168
IFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETREAASQAISTMNGMLLNDRKS
ENSOANP00000024897
RRM
238
256
PAQAVTSMNGKELNGRVLY
ENSOANP00000024897
RRM
290
358
LYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTESGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY
ENSOANP00000024898
RRM
13
83
LYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIR
ENSOANP00000024898
RRM
101
168
IFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETREAASQAISTMNGMLLNDRKY
ENSOANP00000024898
RRM
220
238
PAQAVTSMNGKELNGRVLY
ENSOANP00000024898
RRM
272
340
LYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTESGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY
Links
Other
RRM
family RBPs
Other
Ornithorhynchus anatinus
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPC1L
Anolis carolinensis
ENSACAG00000011841
I
0.731
PABPC1L
Oryctolagus cuniculus
ENSOCUG00000003005
I
0.720
PABPC1L
Ochotona princeps
ENSOPRG00000011846
I
0.724
ENSPPYG00000011042
Pongo pygmaeus
ENSPPYG00000011042
I
0.720
PABPC1L
Pan troglodytes
ENSPTRG00000013531
I
0.720
PABPC1L
Pteropus vampyrus
ENSPVAG00000012663
I
0.710
PABPC1L
Sus scrofa
ENSSSCG00000007382
I
0.724
PABPC1L
Tarsius syrichta
ENSTSYG00000006645
I
0.706
PABPC1L
Tursiops truncatus
ENSTTRG00000007618
I
0.739
Ame_R005305
Ailuropoda melanoleuca
Ame_R005305
I
0.728
AAH71118
Xenopus laevis
AAH71118
I
0.713
AAH80020
Xenopus laevis
AAH80020
I
0.710
AAK29408
Xenopus laevis
AAK29408
I
0.710
Q6GR16
Xenopus laevis
Q6GR16
I
0.713
PABPC1L
Monodelphis domestica
ENSMODG00000016198
I
0.746
PABPC1L
Macaca mulatta
ENSMMUG00000013209
I
0.724
PABPC1L
Bos taurus
ENSBTAG00000016849
I
0.731
PABPC1L
Canis familiaris
ENSCAFG00000009573
I
0.728
PABPC1L
Callithrix jacchus
ENSCJAG00000017628
I
0.717
pabpc1l
Danio rerio
ENSDARG00000002597
I
0.713
LOC100070836
Equus caballus
ENSECAG00000022681
I
0.720
PABPC1L
Homo sapiens
ENSG00000101104
I
0.720
PABPC1L
Gallus gallus
ENSGALG00000004123
I
0.728
PABPC1L
Gorilla gorilla
ENSGGOG00000004584
I
0.720
PABPC1L
Loxodonta africana
ENSLAFG00000003553
I
0.728
PABPC1L
Macropus eugenii
ENSMEUG00000007905
I
0.731
PABPC1L
Meleagris gallopavo
ENSMGAG00000003674
I
0.728
PABPC1L
Microcebus murinus
ENSMICG00000000974
I
0.710
ENSMICG00000009121
Microcebus murinus
ENSMICG00000009121
I
0.827
Q98SP8
Xenopus laevis
Q98SP8
I
0.710