pabpc1l (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000002597 T36032_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.809
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.809
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.809
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.770
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.755
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000015866 RRM 13 83
ENSDARP00000015866 RRM 101 169
ENSDARP00000015866 RRM 193 262
ENSDARP00000015866 RRM 296 364

Links

Other RRM family RBPs
Other Danio rerio RBPs

138 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.896
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.889
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.857
Q6GR16 Xenopus laevis Q6GR16 I 0.846
AAH71118 Xenopus laevis AAH71118 I 0.846
AAK29408 Xenopus laevis AAK29408 I 0.842
AAH80020 Xenopus laevis AAH80020 I 0.842
Q98SP8 Xenopus laevis Q98SP8 I 0.842
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.839
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.839
PABPC1L Gallus gallus ENSGALG00000004123 I 0.835
pabpc1b Danio rerio ENSDARG00000021140 I 0.832
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.832
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.832
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.832
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.832
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.832
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.832
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.832
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.832
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.832
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.832
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.832
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.832
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.832
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.832
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.832
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.832
PABPC1 Homo sapiens ENSG00000070756 D 0.832
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.830
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.828
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.825
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.824
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.824
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.824
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.821
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.821
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.821
pabpc1a Danio rerio ENSDARG00000017219 I 0.821
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.817
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.817
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.816
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.814
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.810
AAH72110 Xenopus laevis AAH72110 I 0.810
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.810
AAI08463 Xenopus laevis AAI08463 I 0.810
Q6IP09 Xenopus laevis Q6IP09 I 0.810
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.810
P20965 Xenopus laevis P20965 I 0.806
CAA40721 Xenopus laevis CAA40721 I 0.806
AAH52100 Xenopus laevis AAH52100 I 0.806
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.806
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.806
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.803
AAA60936 Xenopus laevis AAA60936 I 0.803
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.799
PABPC1L Bos taurus ENSBTAG00000016849 I 0.799
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.799
PABPC4 Gallus gallus ENSGALG00000003800 I 0.796
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.796
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.796
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.796
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.796
AAH73435 Xenopus laevis AAH73435 I 0.796
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.796
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.796
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.796
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.796
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.796
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.796
LOC100054235 Equus caballus ENSECAG00000009396 I 0.796
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.796
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.796
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.792
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.792
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.792
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.792
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.792
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.792
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.792
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.792
PABPC4 Homo sapiens ENSG00000090621 D 0.792
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.792
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.792
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.789
pabpc4 Danio rerio ENSDARG00000059259 I 0.789
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.789
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.789
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.786
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.785
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.785
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.785
PABPC1L Homo sapiens ENSG00000101104 I 0.785
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.785
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.785
Gm10110 Mus musculus ENSMUSG00000062093 I 0.785
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.785
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.785
LOC100070836 Equus caballus ENSECAG00000022681 I 0.781
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.781
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.781
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.781
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.781
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.781
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.781
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.781
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.778
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.778
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.778
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.778
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.774
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.774
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.774
PABPC3 Homo sapiens ENSG00000151846 D 0.774
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.760
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.753
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.742
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.738
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.738
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.738
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.735
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.728
LOC100056021 Equus caballus ENSECAG00000020699 I 0.724
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.721
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.717
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.717
AGAP011092 Anopheles gambiae AGAP011092 I 0.714
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.713
ISCW014211 Ixodes scapularis ISCW014211 I 0.711
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.710
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.710
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.710
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.710
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.707
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.707
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.706
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.703