PABPC1L (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000004123 T37630_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.860
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.860
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.860
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.821
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000006555 RRM 13 83
ENSGALP00000006555 RRM 101 169
ENSGALP00000006555 RRM 193 262
ENSGALP00000006555 RRM 296 364

Links

Other RRM family RBPs
Other Gallus gallus RBPs

151 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.993
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.910
AAH71118 Xenopus laevis AAH71118 I 0.910
Q6GR16 Xenopus laevis Q6GR16 I 0.910
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.910
AAK29408 Xenopus laevis AAK29408 I 0.903
Q98SP8 Xenopus laevis Q98SP8 I 0.903
AAH80020 Xenopus laevis AAH80020 I 0.903
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.892
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.878
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.864
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.864
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.864
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.864
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.864
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.860
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.860
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.860
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.860
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.860
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.860
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.860
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.860
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.860
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.860
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.860
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.860
PABPC1 Homo sapiens ENSG00000070756 D 0.860
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.860
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.857
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.857
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.857
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.857
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.857
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.857
PABPC1L Bos taurus ENSBTAG00000016849 I 0.853
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.853
P20965 Xenopus laevis P20965 I 0.849
pabpc1a Danio rerio ENSDARG00000017219 I 0.849
CAA40721 Xenopus laevis CAA40721 I 0.849
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.849
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.849
AAH52100 Xenopus laevis AAH52100 I 0.849
PABPC4 Gallus gallus ENSGALG00000003800 I 0.849
AAI08463 Xenopus laevis AAI08463 I 0.846
AAH72110 Xenopus laevis AAH72110 I 0.846
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.846
AAA60936 Xenopus laevis AAA60936 I 0.846
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.846
Q6IP09 Xenopus laevis Q6IP09 I 0.846
LOC100070836 Equus caballus ENSECAG00000022681 I 0.842
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.842
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.842
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.842
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.842
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.839
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.839
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.839
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.839
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.839
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.839
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.839
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.836
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.835
pabpc1l Danio rerio ENSDARG00000002597 I 0.835
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.835
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.835
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.835
PABPC1L Homo sapiens ENSG00000101104 I 0.835
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.835
pabpc1b Danio rerio ENSDARG00000021140 I 0.832
AAH73435 Xenopus laevis AAH73435 I 0.832
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.832
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.832
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.828
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.828
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.824
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.824
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.824
pabpc4 Danio rerio ENSDARG00000059259 I 0.824
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.824
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.824
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.821
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.821
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.821
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.821
PABPC4 Homo sapiens ENSG00000090621 D 0.821
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.821
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.821
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.821
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.821
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.821
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.821
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.821
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.821
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.821
LOC100054235 Equus caballus ENSECAG00000009396 I 0.821
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.821
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.821
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.817
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.817
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.817
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.817
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.817
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.817
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.817
Gm10110 Mus musculus ENSMUSG00000062093 I 0.814
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.810
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.810
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.806
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.803
PABPC3 Homo sapiens ENSG00000151846 D 0.803
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.803
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.802
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.792
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.792
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.789
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.789
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.774
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.771
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.763
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.760
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.756
LOC100056021 Equus caballus ENSECAG00000020699 I 0.742
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.735
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.728
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.724
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.721
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.718
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.717
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.717
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.717
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.717
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.717
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.717
PHUM617090 Pediculus humanus PHUM617090 I 0.717
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.717
ISCW014211 Ixodes scapularis ISCW014211 I 0.715
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.714
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.714
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.714
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.714
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.714
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.714
AAEL010318 Aedes aegypti AAEL010318 I 0.710
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.707
AGAP011092 Anopheles gambiae AGAP011092 I 0.707
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.704
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.704
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.703
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.701