PABPC1L (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000101104 T37200_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.777
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.777
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.777
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.766
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000217073 RRM 13 83
ENSP00000217073 RRM 101 169
ENSP00000217073 RRM 193 262
ENSP00000217073 RRM 296 364
ENSP00000217074 RRM 13 83
ENSP00000217074 RRM 101 169
ENSP00000217074 RRM 193 262
ENSP00000217074 RRM 296 329
ENSP00000255136 RRM 13 83
ENSP00000255136 RRM 101 169
ENSP00000255136 RRM 193 262
ENSP00000255136 RRM 296 364

Links

Other RRM family RBPs
Other Homo sapiens RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 1.000
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 1.000
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.996
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.996
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.984
PABPC1L Bos taurus ENSBTAG00000016849 I 0.957
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.950
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.950
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.946
LOC100070836 Equus caballus ENSECAG00000022681 I 0.939
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.939
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.939
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.935
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.932
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.921
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.918
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.918
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.914
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.903
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.892
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.889
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.878
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.875
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.867
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.839
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.839
PABPC1L Gallus gallus ENSGALG00000004123 I 0.835
AAH71118 Xenopus laevis AAH71118 I 0.828
AAH80020 Xenopus laevis AAH80020 I 0.828
Q98SP8 Xenopus laevis Q98SP8 I 0.828
Q6GR16 Xenopus laevis Q6GR16 I 0.828
AAK29408 Xenopus laevis AAK29408 I 0.828
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.810
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.806
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.796
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.796
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.796
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.796
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.796
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.796
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.796
PABPC1 Homo sapiens ENSG00000070756 D 0.796
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.796
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.796
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.796
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.796
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.792
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.792
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.792
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.792
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.792
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.792
LOC100054235 Equus caballus ENSECAG00000009396 I 0.789
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.789
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.789
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.789
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.789
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.789
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.789
Gm10110 Mus musculus ENSMUSG00000062093 I 0.789
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.789
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.786
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.785
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.785
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.785
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.785
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.785
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.785
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.785
PABPC4 Homo sapiens ENSG00000090621 D 0.785
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.785
pabpc1l Danio rerio ENSDARG00000002597 I 0.785
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.785
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.781
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.781
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.781
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.781
AAI08463 Xenopus laevis AAI08463 I 0.778
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.778
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.778
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.778
Q6IP09 Xenopus laevis Q6IP09 I 0.778
AAH72110 Xenopus laevis AAH72110 I 0.778
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.778
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.778
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.774
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.774
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.774
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.774
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.774
pabpc1a Danio rerio ENSDARG00000017219 I 0.774
PABPC4 Gallus gallus ENSGALG00000003800 I 0.771
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.771
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.771
AAH73435 Xenopus laevis AAH73435 I 0.771
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.771
pabpc1b Danio rerio ENSDARG00000021140 I 0.768
pabpc4 Danio rerio ENSDARG00000059259 I 0.767
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.767
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.764
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.763
P20965 Xenopus laevis P20965 I 0.763
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.763
CAA40721 Xenopus laevis CAA40721 I 0.763
AAH52100 Xenopus laevis AAH52100 I 0.763
AAA60936 Xenopus laevis AAA60936 I 0.760
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.760
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.760
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.756
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.756
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.756
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.754
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.753
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.753
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.753
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.753
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.753
PABPC3 Homo sapiens ENSG00000151846 D 0.746
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.731
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.720
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.720
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.717
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.713
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.710
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.710
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.703