PABPC1L (Tursiops truncatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTTRG00000007618 T42592_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.755
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.755
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.755
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.745
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.709
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000007204 RRM 13 83
ENSTTRP00000007204 RRM 101 169
ENSTTRP00000007204 RRM 193 257
ENSTTRP00000007204 RRM 291 359

Links

Other RRM family RBPs
Other Tursiops truncatus RBPs

120 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Bos taurus ENSBTAG00000016849 I 0.932
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.928
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.921
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.918
LOC100070836 Equus caballus ENSECAG00000022681 I 0.907
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.907
PABPC1L Homo sapiens ENSG00000101104 I 0.903
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.903
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.903
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.903
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.903
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.900
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.892
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.892
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.889
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.889
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.885
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.867
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.860
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.857
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.846
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.842
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.842
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.828
PABPC1L Gallus gallus ENSGALG00000004123 I 0.817
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.817
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.817
AAH71118 Xenopus laevis AAH71118 I 0.799
AAK29408 Xenopus laevis AAK29408 I 0.799
AAH80020 Xenopus laevis AAH80020 I 0.799
Q98SP8 Xenopus laevis Q98SP8 I 0.799
Q6GR16 Xenopus laevis Q6GR16 I 0.799
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.789
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.781
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.778
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.778
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.778
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.778
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.778
pabpc1l Danio rerio ENSDARG00000002597 I 0.778
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.778
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.778
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.778
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.778
PABPC1 Homo sapiens ENSG00000070756 D 0.778
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.778
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.778
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.774
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.774
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.774
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.774
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.774
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.774
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.774
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.774
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.768
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.767
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.767
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.767
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.767
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.767
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.767
Gm10110 Mus musculus ENSMUSG00000062093 I 0.767
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.767
PABPC4 Homo sapiens ENSG00000090621 D 0.767
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.767
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.767
AAI08463 Xenopus laevis AAI08463 I 0.767
Q6IP09 Xenopus laevis Q6IP09 I 0.767
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.767
LOC100054235 Equus caballus ENSECAG00000009396 I 0.767
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.767
AAH72110 Xenopus laevis AAH72110 I 0.767
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.767
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.767
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.763
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.763
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.763
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.763
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.763
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.763
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.763
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.760
pabpc1a Danio rerio ENSDARG00000017219 I 0.760
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.760
AAH73435 Xenopus laevis AAH73435 I 0.760
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.760
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.756
PABPC4 Gallus gallus ENSGALG00000003800 I 0.756
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.756
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.756
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.756
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.756
pabpc1b Danio rerio ENSDARG00000021140 I 0.754
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.753
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.753
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.753
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.751
P20965 Xenopus laevis P20965 I 0.749
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.749
AAH52100 Xenopus laevis AAH52100 I 0.749
CAA40721 Xenopus laevis CAA40721 I 0.749
pabpc4 Danio rerio ENSDARG00000059259 I 0.749
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.746
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.746
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.746
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.746
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.746
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.746
AAA60936 Xenopus laevis AAA60936 I 0.746
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.746
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.740
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.739
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.738
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.738
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.735
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.735
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.735
PABPC3 Homo sapiens ENSG00000151846 D 0.728
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.703