PABPC1L (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000009573 T35079_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.780
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.780
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.780
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.766
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000014078 RRM 13 83
ENSCAFP00000014078 RRM 101 169
ENSCAFP00000014078 RRM 193 262
ENSCAFP00000014078 RRM 296 364
ENSCAFP00000014080 RRM 13 83
ENSCAFP00000014080 RRM 101 169
ENSCAFP00000014080 RRM 193 262
ENSCAFP00000014080 RRM 296 364
ENSCAFP00000014082 RRM 13 83
ENSCAFP00000014082 RRM 101 169
ENSCAFP00000014082 RRM 193 262
ENSCAFP00000014082 RRM 296 364

Links

Other RRM family RBPs
Other Canis familiaris RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.975
PABPC1L Bos taurus ENSBTAG00000016849 I 0.964
LOC100070836 Equus caballus ENSECAG00000022681 I 0.961
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.953
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.953
PABPC1L Homo sapiens ENSG00000101104 I 0.950
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.950
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.950
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.946
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.946
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.939
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.939
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.935
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.935
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.932
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.918
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.918
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.910
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.903
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.889
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.878
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.875
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.871
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.867
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.849
PABPC1L Gallus gallus ENSGALG00000004123 I 0.849
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.842
AAH80020 Xenopus laevis AAH80020 I 0.835
AAK29408 Xenopus laevis AAK29408 I 0.835
Q98SP8 Xenopus laevis Q98SP8 I 0.835
AAH71118 Xenopus laevis AAH71118 I 0.828
Q6GR16 Xenopus laevis Q6GR16 I 0.828
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.817
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.814
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.803
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.803
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.803
PABPC1 Homo sapiens ENSG00000070756 D 0.803
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.803
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.803
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.803
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.803
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.803
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.803
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.803
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.803
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.799
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.799
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.799
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.799
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.799
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.799
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.799
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.799
pabpc1l Danio rerio ENSDARG00000002597 I 0.796
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.793
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.792
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.792
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.792
LOC100054235 Equus caballus ENSECAG00000009396 I 0.792
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.792
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.792
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.792
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.792
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.792
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.792
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.792
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.792
AAH72110 Xenopus laevis AAH72110 I 0.789
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.789
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.789
AAI08463 Xenopus laevis AAI08463 I 0.789
Q6IP09 Xenopus laevis Q6IP09 I 0.789
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.789
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.789
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.789
PABPC4 Homo sapiens ENSG00000090621 D 0.789
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.789
Gm10110 Mus musculus ENSMUSG00000062093 I 0.789
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.789
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.789
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.785
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.785
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.785
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.785
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.785
pabpc1a Danio rerio ENSDARG00000017219 I 0.785
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.785
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.781
AAH73435 Xenopus laevis AAH73435 I 0.781
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.781
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.781
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.781
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.778
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.778
PABPC4 Gallus gallus ENSGALG00000003800 I 0.778
pabpc1b Danio rerio ENSDARG00000021140 I 0.775
AAH52100 Xenopus laevis AAH52100 I 0.774
P20965 Xenopus laevis P20965 I 0.774
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.774
CAA40721 Xenopus laevis CAA40721 I 0.774
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.771
pabpc4 Danio rerio ENSDARG00000059259 I 0.771
AAA60936 Xenopus laevis AAA60936 I 0.771
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.771
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.771
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.771
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.768
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.767
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.767
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.763
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.763
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.763
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.760
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.760
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.760
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.756
PABPC3 Homo sapiens ENSG00000151846 D 0.753
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.728
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.728
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.724
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.720
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.720
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.710
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.703
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.703
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.703