PABPC1L (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000016198 T39179_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.805
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.805
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.805
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.787
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000020246 RRM 13 83
ENSMODP00000020246 RRM 101 169
ENSMODP00000020246 RRM 193 262
ENSMODP00000020246 RRM 296 364
ENSMODP00000029058 RRM 13 83
ENSMODP00000029058 RRM 101 169
ENSMODP00000029058 RRM 193 262
ENSMODP00000029058 RRM 296 364

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.943
PABPC1L Bos taurus ENSBTAG00000016849 I 0.900
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.896
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.896
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.892
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.892
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.892
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.889
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.889
PABPC1L Homo sapiens ENSG00000101104 I 0.889
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.889
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.889
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.885
LOC100070836 Equus caballus ENSECAG00000022681 I 0.885
PABPC1L Gallus gallus ENSGALG00000004123 I 0.878
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.878
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.878
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.878
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.878
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.878
AAK29408 Xenopus laevis AAK29408 I 0.864
AAH80020 Xenopus laevis AAH80020 I 0.864
Q98SP8 Xenopus laevis Q98SP8 I 0.864
Q6GR16 Xenopus laevis Q6GR16 I 0.860
AAH71118 Xenopus laevis AAH71118 I 0.860
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.860
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.860
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.857
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.853
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.853
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.846
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.842
pabpc1l Danio rerio ENSDARG00000002597 I 0.839
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.835
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.832
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.832
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.832
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.832
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.832
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.832
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.828
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.828
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.828
PABPC1 Homo sapiens ENSG00000070756 D 0.828
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.828
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.828
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.828
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.828
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.828
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.828
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.828
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.828
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.828
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.828
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.828
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.825
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.824
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.824
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.821
AAH72110 Xenopus laevis AAH72110 I 0.817
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.817
AAI08463 Xenopus laevis AAI08463 I 0.817
Q6IP09 Xenopus laevis Q6IP09 I 0.817
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.810
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.810
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.810
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.810
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.810
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.810
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.810
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.810
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.810
PABPC4 Homo sapiens ENSG00000090621 D 0.810
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.810
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.810
LOC100054235 Equus caballus ENSECAG00000009396 I 0.810
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.810
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.810
pabpc1a Danio rerio ENSDARG00000017219 I 0.810
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.810
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.806
PABPC4 Gallus gallus ENSGALG00000003800 I 0.806
AAH52100 Xenopus laevis AAH52100 I 0.806
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.806
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.806
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.806
CAA40721 Xenopus laevis CAA40721 I 0.806
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.806
P20965 Xenopus laevis P20965 I 0.806
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.803
AAA60936 Xenopus laevis AAA60936 I 0.803
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.803
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.803
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.803
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.803
pabpc1b Danio rerio ENSDARG00000021140 I 0.800
Gm10110 Mus musculus ENSMUSG00000062093 I 0.799
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.799
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.799
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.799
AAH73435 Xenopus laevis AAH73435 I 0.799
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.796
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.796
pabpc4 Danio rerio ENSDARG00000059259 I 0.796
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.796
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.796
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.793
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.793
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.792
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.789
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.789
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.789
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.785
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.785
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.785
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.778
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.778
PABPC3 Homo sapiens ENSG00000151846 D 0.778
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.749
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.749
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.746
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.746
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.738
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.735
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.724
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.724
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.717
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.714
LOC100056021 Equus caballus ENSECAG00000020699 I 0.713
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.710
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.710
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.710
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.710
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.710
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.707
PHUM617090 Pediculus humanus PHUM617090 I 0.707
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.704
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.703
AGAP011092 Anopheles gambiae AGAP011092 I 0.703
AAEL010318 Aedes aegypti AAEL010318 I 0.703
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.703
ISCW014211 Ixodes scapularis ISCW014211 I 0.701