PABPC1L (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000007382 T41441_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.784
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.784
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.784
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.780
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.738
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000007865 RRM 13 83
ENSSSCP00000007865 RRM 101 169
ENSSSCP00000007865 RRM 193 262
ENSSSCP00000007865 RRM 296 364

Links

Other RRM family RBPs
Other Sus scrofa RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Bos taurus ENSBTAG00000016849 I 0.957
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.953
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.953
LOC100070836 Equus caballus ENSECAG00000022681 I 0.950
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.950
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.935
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.932
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.932
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.932
PABPC1L Homo sapiens ENSG00000101104 I 0.932
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.928
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.928
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.928
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.925
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.918
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.914
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.914
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.903
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.896
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.885
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.871
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.867
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.864
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.853
PABPC1L Gallus gallus ENSGALG00000004123 I 0.849
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.849
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.846
AAK29408 Xenopus laevis AAK29408 I 0.839
AAH80020 Xenopus laevis AAH80020 I 0.839
Q98SP8 Xenopus laevis Q98SP8 I 0.839
Q6GR16 Xenopus laevis Q6GR16 I 0.832
AAH71118 Xenopus laevis AAH71118 I 0.832
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.817
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.814
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.806
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.806
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.806
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.806
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.806
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.806
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.806
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.806
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.806
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.806
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.806
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.806
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.806
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.806
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.806
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.806
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.806
PABPC1 Homo sapiens ENSG00000070756 D 0.806
pabpc1l Danio rerio ENSDARG00000002597 I 0.806
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.806
LOC100054235 Equus caballus ENSECAG00000009396 I 0.806
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.803
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.803
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.803
Gm10110 Mus musculus ENSMUSG00000062093 I 0.803
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.803
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.803
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.803
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.803
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.803
PABPC4 Homo sapiens ENSG00000090621 D 0.803
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.803
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.803
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.803
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.803
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.803
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.803
AAI08463 Xenopus laevis AAI08463 I 0.799
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.799
Q6IP09 Xenopus laevis Q6IP09 I 0.799
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.799
AAH72110 Xenopus laevis AAH72110 I 0.799
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.799
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.799
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.796
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.796
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.796
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.796
AAH73435 Xenopus laevis AAH73435 I 0.792
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.792
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.792
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.792
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.792
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.792
PABPC4 Gallus gallus ENSGALG00000003800 I 0.789
pabpc1a Danio rerio ENSDARG00000017219 I 0.789
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.789
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.785
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.785
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.785
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.785
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.782
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.781
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.781
P20965 Xenopus laevis P20965 I 0.781
CAA40721 Xenopus laevis CAA40721 I 0.781
AAH52100 Xenopus laevis AAH52100 I 0.781
pabpc1b Danio rerio ENSDARG00000021140 I 0.779
AAA60936 Xenopus laevis AAA60936 I 0.778
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.778
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.778
pabpc4 Danio rerio ENSDARG00000059259 I 0.778
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.778
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.774
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.774
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.772
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.771
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.771
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.771
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.767
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.763
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.763
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.760
PABPC3 Homo sapiens ENSG00000151846 D 0.756
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.742
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.731
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.728
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.724
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.724
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.717
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.717
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.717
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.707
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.707
AGAP011092 Anopheles gambiae AGAP011092 I 0.707
PHUM617090 Pediculus humanus PHUM617090 I 0.707
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.707
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.703
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.703
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.703
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.703
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.703
ISCW014211 Ixodes scapularis ISCW014211 I 0.701