CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC1L
(
Meleagris gallopavo
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMGAG00000003674
T38341_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.864
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.864
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.864
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.824
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.803
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000003564
RRM
13
83
LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPVR
ENSMGAP00000003564
RRM
101
169
VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIETMNGMLLNDRKVF
ENSMGAP00000003564
RRM
193
262
VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVY
ENSMGAP00000003564
RRM
296
364
LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY
Links
Other
RRM
family RBPs
Other
Meleagris gallopavo
RBPs
153 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPC1L
Gallus gallus
ENSGALG00000004123
I
0.993
PABPC1L
Taeniopygia guttata
ENSTGUG00000005114
I
0.918
PABPC1L
Anolis carolinensis
ENSACAG00000011841
I
0.914
Q6GR16
Xenopus laevis
Q6GR16
I
0.910
AAH71118
Xenopus laevis
AAH71118
I
0.910
Q98SP8
Xenopus laevis
Q98SP8
I
0.900
AAH80020
Xenopus laevis
AAH80020
I
0.900
AAK29408
Xenopus laevis
AAK29408
I
0.900
pabpc1l
Xenopus tropicalis
ENSXETG00000022831
I
0.889
PABPC1L
Monodelphis domestica
ENSMODG00000016198
I
0.878
Pabpc1
Rattus norvegicus
ENSRNOG00000008639
I
0.867
ENSACAG00000016470
Anolis carolinensis
ENSACAG00000016470
I
0.867
PABPC1
Taeniopygia guttata
ENSTGUG00000012067
I
0.867
ENSOANG00000007307
Ornithorhynchus anatinus
ENSOANG00000007307
I
0.867
Pabpc1
Mus musculus
ENSMUSG00000022283
I
0.867
PABPC3
Oryzias latipes
ENSORLG00000002691
I
0.864
ENSOCUG00000023935
Oryctolagus cuniculus
ENSOCUG00000023935
I
0.864
ENSOPRG00000009667
Ochotona princeps
ENSOPRG00000009667
I
0.864
ENSPVAG00000016640
Pteropus vampyrus
ENSPVAG00000016640
I
0.864
ENSOCUG00000004354
Oryctolagus cuniculus
ENSOCUG00000004354
I
0.864
ENSTTRG00000004689
Tursiops truncatus
ENSTTRG00000004689
I
0.864
ENSSSCG00000006063
Sus scrofa
ENSSSCG00000006063
I
0.864
ENSPPYG00000018790
Pongo pygmaeus
ENSPPYG00000018790
I
0.864
ENSLAFG00000013994
Loxodonta africana
ENSLAFG00000013994
I
0.864
PABPC1
Homo sapiens
ENSG00000070756
D
0.864
PABPC1
Macaca mulatta
ENSMMUG00000017786
I
0.864
ENSCAFG00000000567
Canis familiaris
ENSCAFG00000000567
I
0.864
LOC100413032
Callithrix jacchus
ENSCJAG00000015833
I
0.864
XR_030308.1
Monodelphis domestica
ENSMODG00000006222
I
0.861
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.860
PABPC3
Gasterosteus aculeatus
ENSGACG00000003572
I
0.860
XR_023909.1
Pan troglodytes
ENSPTRG00000020475
I
0.860
PABPC3
Takifugu rubripes
ENSTRUG00000011577
I
0.860
PABPC1L
Macropus eugenii
ENSMEUG00000007905
I
0.857
Ame_R005305
Ailuropoda melanoleuca
Ame_R005305
I
0.857
PABPC1L
Bos taurus
ENSBTAG00000016849
I
0.853
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.853
PABPC1L
Oryctolagus cuniculus
ENSOCUG00000003005
I
0.853
pabpc1a
Danio rerio
ENSDARG00000017219
I
0.853
P20965
Xenopus laevis
P20965
I
0.849
AAH52100
Xenopus laevis
AAH52100
I
0.849
PABPC1L
Loxodonta africana
ENSLAFG00000003553
I
0.849
CAA40721
Xenopus laevis
CAA40721
I
0.849
PABPC1L
Canis familiaris
ENSCAFG00000009573
I
0.849
PABPC1L
Sus scrofa
ENSSSCG00000007382
I
0.849
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.849
AAI08463
Xenopus laevis
AAI08463
I
0.846
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.846
Ame_R001741
Ailuropoda melanoleuca
Ame_R001741
I
0.846
ENSTNIG00000009153
Tetraodon nigroviridis
ENSTNIG00000009153
I
0.846
AAH72110
Xenopus laevis
AAH72110
I
0.846
Q6IP09
Xenopus laevis
Q6IP09
I
0.846
PABPC1L
Ochotona princeps
ENSOPRG00000011846
I
0.846
AAA60936
Xenopus laevis
AAA60936
I
0.846
LOC100070836
Equus caballus
ENSECAG00000022681
I
0.842
ENSTRUG00000003767
Takifugu rubripes
ENSTRUG00000003767
I
0.842
ENSTSYG00000004229
Tarsius syrichta
ENSTSYG00000004229
I
0.842
PABPC1L
Microcebus murinus
ENSMICG00000000974
I
0.842
PABPC1L
Pan troglodytes
ENSPTRG00000013531
I
0.842
PABPC1L
Macaca mulatta
ENSMMUG00000013209
I
0.842
Pabpc2
Rattus norvegicus
ENSRNOG00000014527
I
0.842
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.839
Pabpc2
Mus musculus
ENSMUSG00000051732
I
0.839
PABPC1L
Pteropus vampyrus
ENSPVAG00000012663
I
0.839
PABPC1L
Homo sapiens
ENSG00000101104
I
0.839
pabpc1l
Danio rerio
ENSDARG00000002597
I
0.839
ENSPPYG00000011042
Pongo pygmaeus
ENSPPYG00000011042
I
0.839
ENSORLG00000003008
Oryzias latipes
ENSORLG00000003008
I
0.839
PABPC1L
Gorilla gorilla
ENSGGOG00000004584
I
0.839
pabpc1b
Danio rerio
ENSDARG00000021140
I
0.836
AAH73435
Xenopus laevis
AAH73435
I
0.835
ENSGACG00000003771
Gasterosteus aculeatus
ENSGACG00000003771
I
0.835
XM_001367383.1
Monodelphis domestica
ENSMODG00000017105
I
0.835
LOC100411130
Callithrix jacchus
ENSCJAG00000018953
I
0.835
Q8QGJ7_FUGRU
Takifugu rubripes
ENSTRUG00000005907
I
0.832
PABPC1L
Callithrix jacchus
ENSCJAG00000017628
I
0.832
pabpc4
Danio rerio
ENSDARG00000059259
I
0.828
PABPC1L
Tarsius syrichta
ENSTSYG00000006645
I
0.828
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.828
PABPC4
Erinaceus europaeus
ENSEEUG00000002962
I
0.828
PABPC3
Tetraodon nigroviridis
ENSTNIG00000013307
I
0.825
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.824
PABPC1L
Gasterosteus aculeatus
ENSGACG00000002792
I
0.824
PABPC4
Homo sapiens
ENSG00000090621
D
0.824
PABPC1L
Erinaceus europaeus
ENSEEUG00000005978
I
0.824
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.824
PABPC1L
Takifugu rubripes
ENSTRUG00000011085
I
0.824
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.824
Pabpc3
Rattus norvegicus
ENSRNOG00000017367
I
0.824
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.824
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.824
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.824
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.824
PABPC4
Ochotona princeps
ENSOPRG00000011984
I
0.824
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.824
ENSPPYG00000005219
Pongo pygmaeus
ENSPPYG00000005219
I
0.824
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.824
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.824
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.824
PABPC4
Gasterosteus aculeatus
ENSGACG00000007179
I
0.821
A6MKJ4_CALJA
Callithrix jacchus
ENSCJAG00000002512
I
0.821
PABPC1L
Cavia porcellus
ENSCPOG00000013633
I
0.821
PABPC4
Tetraodon nigroviridis
ENSTNIG00000016902
I
0.821
PABPC4
Oryctolagus cuniculus
ENSOCUG00000000562
I
0.821
PABPC3
Macaca mulatta
ENSMMUG00000020835
I
0.821
Gm10110
Mus musculus
ENSMUSG00000062093
I
0.817
PABPC1L
Tursiops truncatus
ENSTTRG00000007618
I
0.817
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.814
Pabpc6
Mus musculus
ENSMUSG00000046173
I
0.814
PABPC4
Oryzias latipes
ENSORLG00000017479
I
0.810
D3ZEY8_RAT
Rattus norvegicus
ENSRNOG00000028592
I
0.806
Q2VIP2_PANTR
Pan troglodytes
ENSPTRG00000022593
I
0.806
PABPC1L
Oryzias latipes
ENSORLG00000010322
I
0.806
PABPC3
Homo sapiens
ENSG00000151846
D
0.803
ENSACAG00000002544
Anolis carolinensis
ENSACAG00000002544
I
0.796
ENSMICG00000016633
Microcebus murinus
ENSMICG00000016633
I
0.792
Pabpc1l
Rattus norvegicus
ENSRNOG00000012750
I
0.792
Pabpc1l
Mus musculus
ENSMUSG00000054582
I
0.789
pabpc4
Xenopus tropicalis
ENSXETG00000010946
I
0.778
XM_001373066.1
Monodelphis domestica
ENSMODG00000013156
I
0.774
PABPC1L
Spermophilus tridecemlineatus
ENSSTOG00000003739
I
0.767
Ame_R019277
Ailuropoda melanoleuca
Ame_R019277
I
0.763
PABPC1L
Tetraodon nigroviridis
ENSTNIG00000017903
I
0.760
LOC100056021
Equus caballus
ENSECAG00000020699
I
0.746
PABPC4
Procavia capensis
ENSPCAG00000003341
I
0.738
PABPC1L
Ornithorhynchus anatinus
ENSOANG00000015793
N
0.728
ENSMICG00000009121
Microcebus murinus
ENSMICG00000009121
I
0.728
estExt_Genewise1.C_1790010
Capitella teleta
estExt_Genewise1.C_1790010
I
0.724
ENSCSAVG00000004246
Ciona savignyi
ENSCSAVG00000004246
I
0.721
ENSCING00000002796
Ciona intestinalis
ENSCING00000002796
I
0.721
fgenesh1_pm.scaffold_278000002
Nematostella vectensis
fgenesh1_pm.scaffold_278000002
I
0.718
PHUM617090
Pediculus humanus
PHUM617090
I
0.717
CPIJ007980
Culex quinquefasciatus
CPIJ007980
I
0.717
amel4_ncbi_hmm1700
Apis mellifera
amel4_ncbi_hmm1700
I
0.717
CpipJ_CPIJ007980
Culex pipiens
CpipJ_CPIJ007980
I
0.717
BGIBMGA003469
Bombyx mori
BGIBMGA003469
I
0.717
e_gw.313.40.1
Branchiostoma floridae
e_gw.313.40.1
I
0.717
gw.1.65.1
Branchiostoma floridae
gw.1.65.1
I
0.717
amel4_ncbi_hmm2036
Apis mellifera
amel4_ncbi_hmm2036
I
0.717
amel4_ncbi_hmm1364
Apis mellifera
amel4_ncbi_hmm1364
I
0.717
ISCW014211
Ixodes scapularis
ISCW014211
I
0.715
AAEL010318
Aedes aegypti
AAEL010318
I
0.714
nasonia_NCBI_hmm394743
Nasonia vitripennis
nasonia_NCBI_hmm394743
I
0.714
nasonia_NCBI_hmm386743
Nasonia vitripennis
nasonia_NCBI_hmm386743
I
0.714
nasonia_NCBI_hmm390743
Nasonia vitripennis
nasonia_NCBI_hmm390743
I
0.714
XM_001379460.1
Monodelphis domestica
ENSMODG00000015024
I
0.710
AGAP011092
Anopheles gambiae
AGAP011092
I
0.710
XP_801795.2
Strongylocentrotus purpuratus
XP_801795.2
I
0.708
XP_001177907.1
Strongylocentrotus purpuratus
XP_001177907.1
I
0.708
DGIL_AUG5s5076g2t1
Acyrtosiphon pisum
DGIL_AUG5s5076g2t1
I
0.703
PABPC4
Spermophilus tridecemlineatus
ENSSTOG00000010416
I
0.703
BDE_estExt_fgenesh1_pg.C_380037
Daphnia pulex
BDE_estExt_fgenesh1_pg.C_380037
I
0.701
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
0.701