PABPC1L (Anolis carolinensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSACAG00000011841 T34690_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.833
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.833
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.833
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.798
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.787
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000011766 RRM 13 83
ENSACAP00000011766 RRM 101 169
ENSACAP00000011766 RRM 193 262
ENSACAP00000011766 RRM 296 364

Links

Other RRM family RBPs
Other Anolis carolinensis RBPs

152 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.914
PABPC1L Gallus gallus ENSGALG00000004123 I 0.910
Q6GR16 Xenopus laevis Q6GR16 I 0.892
AAH71118 Xenopus laevis AAH71118 I 0.892
AAH80020 Xenopus laevis AAH80020 I 0.889
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.889
AAK29408 Xenopus laevis AAK29408 I 0.889
Q98SP8 Xenopus laevis Q98SP8 I 0.889
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.889
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.871
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.864
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.860
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.860
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.860
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.860
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.860
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.857
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.857
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.857
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.857
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.857
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.857
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.857
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.857
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.857
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.857
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.857
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.857
PABPC1 Homo sapiens ENSG00000070756 D 0.857
pabpc1l Danio rerio ENSDARG00000002597 I 0.857
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.857
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.854
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.853
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.853
PABPC1L Bos taurus ENSBTAG00000016849 I 0.853
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.853
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.853
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.849
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.846
pabpc1a Danio rerio ENSDARG00000017219 I 0.846
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.846
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.846
AAH52100 Xenopus laevis AAH52100 I 0.842
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.842
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.842
P20965 Xenopus laevis P20965 I 0.842
CAA40721 Xenopus laevis CAA40721 I 0.842
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.842
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.839
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.839
AAH72110 Xenopus laevis AAH72110 I 0.839
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.839
Q6IP09 Xenopus laevis Q6IP09 I 0.839
PABPC1L Homo sapiens ENSG00000101104 I 0.839
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.839
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.839
AAI08463 Xenopus laevis AAI08463 I 0.839
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.839
AAA60936 Xenopus laevis AAA60936 I 0.839
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.835
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.835
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.835
LOC100070836 Equus caballus ENSECAG00000022681 I 0.835
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.832
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.832
PABPC4 Gallus gallus ENSGALG00000003800 I 0.832
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.832
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.828
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.828
AAH73435 Xenopus laevis AAH73435 I 0.828
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.828
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.824
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.824
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.824
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.824
pabpc1b Danio rerio ENSDARG00000021140 I 0.821
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.821
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.821
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.821
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.821
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.821
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.821
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.821
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.821
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.821
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.821
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.821
PABPC4 Homo sapiens ENSG00000090621 D 0.821
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.821
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.821
LOC100054235 Equus caballus ENSECAG00000009396 I 0.821
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.818
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.817
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.817
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.817
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.817
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.817
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.817
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.817
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.814
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.814
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.810
Gm10110 Mus musculus ENSMUSG00000062093 I 0.810
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.810
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.809
PABPC3 Homo sapiens ENSG00000151846 D 0.806
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.806
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.806
pabpc4 Danio rerio ENSDARG00000059259 I 0.803
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.803
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.799
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.799
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.799
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.796
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.792
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.792
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.789
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.774
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.771
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.767
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.767
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.767
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.756
LOC100056021 Equus caballus ENSECAG00000020699 I 0.738
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.735
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.731
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.724
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.721
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.721
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.721
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.721
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.721
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.720
ISCW014211 Ixodes scapularis ISCW014211 I 0.718
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.717
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.715
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.715
AGAP011092 Anopheles gambiae AGAP011092 I 0.714
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.714
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.714
AAEL010318 Aedes aegypti AAEL010318 I 0.710
PHUM617090 Pediculus humanus PHUM617090 I 0.710
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.707
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.707
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.707
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.707
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.707
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.703
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.703
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.703
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.701
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.701