AAH80020 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH80020 T59556_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.819
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.819
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.819
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.780
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH80020 RRM 13 83
AAH80020 RRM 101 169
AAH80020 RRM 193 262
AAH80020 RRM 296 364

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q98SP8 Xenopus laevis Q98SP8 I 1.000
AAK29408 Xenopus laevis AAK29408 I 1.000
AAH71118 Xenopus laevis AAH71118 I 0.961
Q6GR16 Xenopus laevis Q6GR16 I 0.961
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.939
PABPC1L Gallus gallus ENSGALG00000004123 I 0.903
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.900
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.889
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.875
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.864
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.860
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.849
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.846
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.846
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.846
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.846
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.846
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.842
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.842
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.842
pabpc1l Danio rerio ENSDARG00000002597 I 0.842
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.842
PABPC1 Homo sapiens ENSG00000070756 D 0.842
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.842
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.842
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.842
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.842
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.842
PABPC1L Bos taurus ENSBTAG00000016849 I 0.842
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.842
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.842
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.842
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.842
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.839
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.839
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.839
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.839
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.835
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.835
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.835
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.835
pabpc1a Danio rerio ENSDARG00000017219 I 0.835
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.835
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.832
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.832
AAH72110 Xenopus laevis AAH72110 I 0.832
Q6IP09 Xenopus laevis Q6IP09 I 0.832
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.832
AAI08463 Xenopus laevis AAI08463 I 0.832
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.832
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.828
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.828
P20965 Xenopus laevis P20965 I 0.828
CAA40721 Xenopus laevis CAA40721 I 0.828
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.828
AAH52100 Xenopus laevis AAH52100 I 0.828
PABPC1L Homo sapiens ENSG00000101104 I 0.828
LOC100070836 Equus caballus ENSECAG00000022681 I 0.828
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.828
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.828
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.828
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.824
AAA60936 Xenopus laevis AAA60936 I 0.824
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.824
pabpc1b Danio rerio ENSDARG00000021140 I 0.821
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.821
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.821
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.821
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.814
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.814
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.810
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.810
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.810
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.810
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.810
AAH73435 Xenopus laevis AAH73435 I 0.810
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.810
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.809
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.806
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.806
LOC100054235 Equus caballus ENSECAG00000009396 I 0.806
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.806
PABPC4 Gallus gallus ENSGALG00000003800 I 0.806
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.806
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.806
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.806
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.804
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.803
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.803
Gm10110 Mus musculus ENSMUSG00000062093 I 0.803
PABPC4 Homo sapiens ENSG00000090621 D 0.803
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.803
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.803
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.803
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.803
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.803
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.803
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.800
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.799
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.799
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.799
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.799
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.799
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.799
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.799
pabpc4 Danio rerio ENSDARG00000059259 I 0.799
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.799
PABPC3 Homo sapiens ENSG00000151846 D 0.796
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.796
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.796
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.792
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.789
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.785
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.785
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.781
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.781
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.781
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.778
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.756
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.756
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.753
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.749
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.742
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.728
LOC100056021 Equus caballus ENSECAG00000020699 I 0.728
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.724
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.724
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.724
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.724
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.724
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.721
ISCW014211 Ixodes scapularis ISCW014211 I 0.715
PHUM617090 Pediculus humanus PHUM617090 I 0.714
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.710
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.710
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.710
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.710
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.710
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.710
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.707
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.707
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.707
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.707
AAEL010318 Aedes aegypti AAEL010318 I 0.703
AGAP011092 Anopheles gambiae AGAP011092 I 0.703