PABPC1L (Tarsius syrichta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTSYG00000006645 T42450_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.773
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.773
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.773
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.759
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTSYP00000006078 RRM 13 83
ENSTSYP00000006078 RRM 101 169
ENSTSYP00000006078 RRM 193 262
ENSTSYP00000006078 RRM 296 362

Links

Other RRM family RBPs
Other Tarsius syrichta RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Homo sapiens ENSG00000101104 I 0.914
PABPC1L Bos taurus ENSBTAG00000016849 I 0.914
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.914
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.914
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.910
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.910
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.903
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.903
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.903
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.900
LOC100070836 Equus caballus ENSECAG00000022681 I 0.900
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.900
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.900
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.900
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.896
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.889
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.885
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.875
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.867
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.853
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.846
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.846
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.842
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.835
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.828
PABPC1L Gallus gallus ENSGALG00000004123 I 0.824
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.824
AAH71118 Xenopus laevis AAH71118 I 0.814
Q6GR16 Xenopus laevis Q6GR16 I 0.814
AAH80020 Xenopus laevis AAH80020 I 0.810
AAK29408 Xenopus laevis AAK29408 I 0.810
Q98SP8 Xenopus laevis Q98SP8 I 0.810
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.803
PABPC1 Homo sapiens ENSG00000070756 D 0.792
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.792
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.792
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.792
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.792
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.792
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.792
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.792
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.792
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.792
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.792
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.792
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.789
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.789
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.789
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.789
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.789
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.789
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.789
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.782
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.781
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.781
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.781
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.781
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.781
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.781
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.781
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.781
LOC100054235 Equus caballus ENSECAG00000009396 I 0.781
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.781
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.778
PABPC4 Homo sapiens ENSG00000090621 D 0.778
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.778
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.778
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.778
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.778
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.778
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.778
Gm10110 Mus musculus ENSMUSG00000062093 I 0.778
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.778
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.778
pabpc1l Danio rerio ENSDARG00000002597 I 0.778
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.778
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.778
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.774
AAI08463 Xenopus laevis AAI08463 I 0.774
AAH72110 Xenopus laevis AAH72110 I 0.774
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.774
Q6IP09 Xenopus laevis Q6IP09 I 0.774
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.774
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.774
pabpc1a Danio rerio ENSDARG00000017219 I 0.771
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.771
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.771
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.771
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.771
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.771
pabpc1b Danio rerio ENSDARG00000021140 I 0.768
AAH73435 Xenopus laevis AAH73435 I 0.763
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.763
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.763
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.763
PABPC4 Gallus gallus ENSGALG00000003800 I 0.763
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.763
AAH52100 Xenopus laevis AAH52100 I 0.760
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.760
CAA40721 Xenopus laevis CAA40721 I 0.760
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.760
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.760
P20965 Xenopus laevis P20965 I 0.760
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.760
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.757
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.756
AAA60936 Xenopus laevis AAA60936 I 0.756
pabpc4 Danio rerio ENSDARG00000059259 I 0.753
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.749
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.749
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.749
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.749
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.747
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.746
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.742
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.742
PABPC3 Homo sapiens ENSG00000151846 D 0.742
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.735
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.717
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.717
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.710
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.706
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.703