HNRNPC (Sorex araneus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSARG00000003711 T41294_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		1.000
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.906
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000003341 RRM 18 81

Links

Other RRM family RBPs
Other Sorex araneus RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK11796.1 Cannabis sativa PK11796.1 N 0.000
cassava11148.m1 Manihot esculenta cassava11148.m1 N 0.000
cassava11149.m1 Manihot esculenta cassava11149.m1 N 0.000
cassava11150.m1 Manihot esculenta cassava11150.m1 N 0.000
cassava6287.valid.m1 Manihot esculenta cassava6287.valid.m1 N 0.000
cassava6288.valid.m1 Manihot esculenta cassava6288.valid.m1 N 0.000
cassava6289.valid.m1 Manihot esculenta cassava6289.valid.m1 N 0.000
Cucsa.033870 Cucumis sativus Cucsa.033870 N 0.000
Glyma03g40500.1 Glycine max Glyma03g40500.1 N 0.000
Glyma10g30150.1 Glycine max Glyma10g30150.1 N 0.000
Glyma19g43160.1 Glycine max Glyma19g43160.1 N 0.000
Glyma20g37260.1 Glycine max Glyma20g37260.1 N 0.000
chr5.LjT15D05.170.nd Lotus japonicus chr5.LjT15D05.170.nd N 0.000
LjB12P21.20.nc Lotus japonicus LjB12P21.20.nc N 0.000
PDK_20s1387941g001 Phoenix dactylifera PDK_20s1387941g001 N 0.000
PDK_20s1528451g001 Phoenix dactylifera PDK_20s1528451g001 N 0.000
cassava11147.m1 Manihot esculenta cassava11147.m1 N 0.000
cassava11146.m1 Manihot esculenta cassava11146.m1 N 0.000
AIN1 Arabidopsis thaliana AT1G54490-TAIR-G N 0.000
GSVIVG00009879001 Vitis vinifera GSVIVG00009879001 N 0.000
B9GQW8_POPTR Populus trichocarpa POPTR_0002s02570 N 0.000
POPTR_0005s05060 Populus trichocarpa POPTR_0005s05060 N 0.000
B9H4V3_POPTR Populus trichocarpa POPTR_0005s25870 N 0.000
B9I8A8_POPTR Populus trichocarpa POPTR_0030s00400 N 0.000
SB01G005340 Sorghum bicolor Sb01g005340 N 0.000
XM_002865463.1 Arabidopsis lyrata scaffold_800897.1 N 0.000
30128.m008637 Ricinus communis 30128.m008637 N 0.000
30170.m014167 Ricinus communis 30170.m014167 N 0.000
cassava11141.m1 Manihot esculenta cassava11141.m1 N 0.000
cassava11142.m1 Manihot esculenta cassava11142.m1 N 0.000
cassava11143.m1 Manihot esculenta cassava11143.m1 N 0.000
cassava11144.m1 Manihot esculenta cassava11144.m1 N 0.000
cassava11145.m1 Manihot esculenta cassava11145.m1 N 0.000
PDK_20s1898261g001 Phoenix dactylifera PDK_20s1898261g001 N 0.000