CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPC
(
Sorex araneus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSARG00000003711
T41294_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
1.000
HNRNPCL1
M158_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00167
0.906
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
0.781
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000003341
RRM
18
81
VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLD
Links
Other
RRM
family RBPs
Other
Sorex araneus
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK11796.1
Cannabis sativa
PK11796.1
N
0.000
cassava11148.m1
Manihot esculenta
cassava11148.m1
N
0.000
cassava11149.m1
Manihot esculenta
cassava11149.m1
N
0.000
cassava11150.m1
Manihot esculenta
cassava11150.m1
N
0.000
cassava6287.valid.m1
Manihot esculenta
cassava6287.valid.m1
N
0.000
cassava6288.valid.m1
Manihot esculenta
cassava6288.valid.m1
N
0.000
cassava6289.valid.m1
Manihot esculenta
cassava6289.valid.m1
N
0.000
Cucsa.033870
Cucumis sativus
Cucsa.033870
N
0.000
Glyma03g40500.1
Glycine max
Glyma03g40500.1
N
0.000
Glyma10g30150.1
Glycine max
Glyma10g30150.1
N
0.000
Glyma19g43160.1
Glycine max
Glyma19g43160.1
N
0.000
Glyma20g37260.1
Glycine max
Glyma20g37260.1
N
0.000
chr5.LjT15D05.170.nd
Lotus japonicus
chr5.LjT15D05.170.nd
N
0.000
LjB12P21.20.nc
Lotus japonicus
LjB12P21.20.nc
N
0.000
PDK_20s1387941g001
Phoenix dactylifera
PDK_20s1387941g001
N
0.000
PDK_20s1528451g001
Phoenix dactylifera
PDK_20s1528451g001
N
0.000
cassava11147.m1
Manihot esculenta
cassava11147.m1
N
0.000
cassava11146.m1
Manihot esculenta
cassava11146.m1
N
0.000
AIN1
Arabidopsis thaliana
AT1G54490-TAIR-G
N
0.000
GSVIVG00009879001
Vitis vinifera
GSVIVG00009879001
N
0.000
B9GQW8_POPTR
Populus trichocarpa
POPTR_0002s02570
N
0.000
POPTR_0005s05060
Populus trichocarpa
POPTR_0005s05060
N
0.000
B9H4V3_POPTR
Populus trichocarpa
POPTR_0005s25870
N
0.000
B9I8A8_POPTR
Populus trichocarpa
POPTR_0030s00400
N
0.000
SB01G005340
Sorghum bicolor
Sb01g005340
N
0.000
XM_002865463.1
Arabidopsis lyrata
scaffold_800897.1
N
0.000
30128.m008637
Ricinus communis
30128.m008637
N
0.000
30170.m014167
Ricinus communis
30170.m014167
N
0.000
cassava11141.m1
Manihot esculenta
cassava11141.m1
N
0.000
cassava11142.m1
Manihot esculenta
cassava11142.m1
N
0.000
cassava11143.m1
Manihot esculenta
cassava11143.m1
N
0.000
cassava11144.m1
Manihot esculenta
cassava11144.m1
N
0.000
cassava11145.m1
Manihot esculenta
cassava11145.m1
N
0.000
PDK_20s1898261g001
Phoenix dactylifera
PDK_20s1898261g001
N
0.000