ENSTNIG00000011257 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000011257 T42093_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.867
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000014196 RRM 141 215
ENSTNIP00000014196 RRM 252 322
ENSTNIP00000014196 RRM 382 445

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
U2AF2 Homo sapiens ENSG00000063244 D 0.867
U2af50 Drosophila melanogaster FBgn0005411 D 0.786
GI14308 Drosophila mojavensis FBgn0137061 I 0.781
GH12033 Drosophila grimshawi FBgn0119512 I 0.781
GG19328 Drosophila erecta FBgn0111532 I 0.786
GF19596 Drosophila ananassae FBgn0096603 I 0.786
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.786
AAH44032 Xenopus laevis AAH44032 I 0.867
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.867
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.867
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.957
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.857
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.857
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.867
GL15893 Drosophila persimilis FBgn0153497 I 0.786
GM13406 Drosophila sechellia FBgn0168337 I 0.786
Smp_019690 Schistosoma mansoni Smp_019690 I 0.752
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.867
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.786
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.735
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.795
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.767
Aqu1.223751 Amphimedon queenslandica Aqu1.223751 I 0.700
185543 Helobdella robusta 185543 I 0.758
PHUM460480 Pediculus humanus PHUM460480 I 0.757
GE15975 Drosophila yakuba FBgn0233531 I 0.786
GK10063 Drosophila willistoni FBgn0212078 I 0.786
GJ19364 Drosophila virilis FBgn0206507 I 0.729
GD24494 Drosophila simulans FBgn0195829 I 0.786
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.862
U2AF2 Pan troglodytes ENSPTRG00000011523 I 0.752
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.862
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.862
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.867
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.867
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.786
CBG15152 Caenorhabditis briggsae CBG15152 I 0.711
AGAP002908 Anopheles gambiae AGAP002908 I 0.781
AAEL002818 Aedes aegypti AAEL002818 I 0.786
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.790
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.776
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.776
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.729
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.786
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.739
LOC100400743 Callithrix jacchus ENSCJAG00000017128 I 0.743
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.867
U2af2 Mus musculus ENSMUSG00000030435 I 0.867
XM_001119590.1 Macaca mulatta ENSMMUG00000019197 I 0.748
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.867
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.867
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.967
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.857
U2AF2 Felis catus ENSFCAG00000011504 I 0.700
LOC100050729 Equus caballus ENSECAG00000010110 I 0.867
U2af2 Dipodomys ordii ENSDORG00000003250 I 0.752
u2af2a Danio rerio ENSDARG00000012505 I 0.848
u2af2b Danio rerio ENSDARG00000011740 I 0.838
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.725
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.786