CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GA16600-RA
(
Drosophila pseudoobscura
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0076615
T43144_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0272562
RRM
1142
1206
LLLKNLTAQIDGPTLRTLCMQHGPLVSFHLYLNQGIALCKYTTREEASKAQMALNNCVLGNTTIF
Links
Other
RRM
family RBPs
Other
Drosophila pseudoobscura
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_01306
Puccinia triticina
PTTG_01306
N
0.000
LOC_Os01g32470
Oryza sativa
LOC_Os01g32470
N
0.000
LOC_Os02g26040
Oryza sativa
LOC_Os02g26040
N
0.000
LOC_Os02g37790
Oryza sativa
LOC_Os02g37790
N
0.000
LOC_Os12g15720
Oryza sativa
LOC_Os12g15720
N
0.000