CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.3.1071.1
(
Trichoderma reesei
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.3.1071.1
T49935_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.803
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.3.1071.1
RRM
71
141
LFVGNLAGETTDESLLKAFSRWKSVQKARVIRDKRTTKSKGYGFVSFSDADDFFQAAKEMHGKYIQSHPVV
Links
Other
RRM
family RBPs
Other
Trichoderma reesei
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.10134_g
Serpula lacrymans
Genemark.10134_g
N
0.000
Genemark.2746_g
Serpula lacrymans
Genemark.2746_g
N
0.000
Genemark.2747_g
Serpula lacrymans
Genemark.2747_g
N
0.000
Genemark.2836_g
Serpula lacrymans
Genemark.2836_g
N
0.000
Genemark.291_g
Serpula lacrymans
Genemark.291_g
N
0.000
Genemark.383_g
Serpula lacrymans
Genemark.383_g
N
0.000
Genemark.4171_g
Serpula lacrymans
Genemark.4171_g
N
0.000
Genemark.4605_g
Serpula lacrymans
Genemark.4605_g
N
0.000
Genemark.4804_g
Serpula lacrymans
Genemark.4804_g
N
0.000
Genemark.6745_g
Serpula lacrymans
Genemark.6745_g
N
0.000
Genemark.697_g
Serpula lacrymans
Genemark.697_g
N
0.000
Genemark.7317_g
Serpula lacrymans
Genemark.7317_g
N
0.000
Genemark.8449_g
Serpula lacrymans
Genemark.8449_g
N
0.000
Genemark.920_g
Serpula lacrymans
Genemark.920_g
N
0.000
Genemark.2433_g
Serpula lacrymans
Genemark.2433_g
N
0.000
Genemark.1711_g
Serpula lacrymans
Genemark.1711_g
N
0.000
Genemark.10431_g
Serpula lacrymans
Genemark.10431_g
N
0.000
Genemark.10542_g
Serpula lacrymans
Genemark.10542_g
N
0.000
Genemark.10616_g
Serpula lacrymans
Genemark.10616_g
N
0.000
Genemark.10659_g
Serpula lacrymans
Genemark.10659_g
N
0.000
Genemark.10663_g
Serpula lacrymans
Genemark.10663_g
N
0.000
Genemark.10994_g
Serpula lacrymans
Genemark.10994_g
N
0.000
Genemark.114_g
Serpula lacrymans
Genemark.114_g
N
0.000
Genemark.11728_g
Serpula lacrymans
Genemark.11728_g
N
0.000
Genemark.11784_g
Serpula lacrymans
Genemark.11784_g
N
0.000
Genemark.12078_g
Serpula lacrymans
Genemark.12078_g
N
0.000
Genemark.12100_g
Serpula lacrymans
Genemark.12100_g
N
0.000
Genemark.12630_g
Serpula lacrymans
Genemark.12630_g
N
0.000
Genemark.12634_g
Serpula lacrymans
Genemark.12634_g
N
0.000
Genemark.948_g
Serpula lacrymans
Genemark.948_g
N
0.000