e_gw.60.249.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.60.249.1 T50230_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.732
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.60.249.1 RRM 59 128
e_gw.60.249.1 RRM 139 204
e_gw.60.249.1 RRM 234 298

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM46 Homo sapiens ENSG00000151962 D 0.734
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.749
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.714
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.707
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.730
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.734
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.723
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.734
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.734
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.734
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.734
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.729
RBM47 Procavia capensis ENSPCAG00000011879 I 0.734
A1CF Oryzias latipes ENSORLG00000013342 I 0.721
Rbm46 Mus musculus ENSMUSG00000033882 I 0.734
A1cf Mus musculus ENSMUSG00000052595 I 0.707
Rbm47 Mus musculus ENSMUSG00000070780 I 0.729
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.709
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.700
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.729
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.707
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.734
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.734
RBM47 Oryzias latipes ENSORLG00000005847 I 0.709
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.734
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.702
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.712
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.734
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.729
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.734
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.817
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.995
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.759
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.734
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.734
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.757
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.704
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.707
RBM47 Sorex araneus ENSSARG00000001735 I 0.734
RBM46 Sorex araneus ENSSARG00000006520 I 0.734
RBM47 Sus scrofa ENSSSCG00000008796 I 0.739
RBM46 Sus scrofa ENSSSCG00000008994 I 0.734
A1CF Sus scrofa ENSSSCG00000010431 I 0.707
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.729
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.736
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.749
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.707
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.704
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 0.757
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.739
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.749
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.739
A1CF Cavia porcellus ENSCPOG00000009807 I 0.707
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.719
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.734
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.734
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.721
RBM47 Danio rerio ENSDARG00000061985 I 0.704
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.734
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.724
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.707
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.739
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.731
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.729
RBM46 Bos taurus ENSBTAG00000001696 I 0.734
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.739
A1CF Bos taurus ENSBTAG00000021195 I 0.702
RBM46 Canis familiaris ENSCAFG00000008473 I 0.734
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.724
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.734
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.707
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.739
Rbm46 Dipodomys ordii ENSDORG00000006405 I 0.704
LOC100063743 Equus caballus ENSECAG00000004400 I 0.719
RBM46 Equus caballus ENSECAG00000007649 I 0.739
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.734
A1CF Loxodonta africana ENSLAFG00000015462 I 0.707
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.739
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.729
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.749
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.729
A1CF Macaca mulatta ENSMMUG00000007077 I 0.707
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.734
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.734
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.734
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.734
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.734
A1CF Equus caballus ENSECAG00000010424 I 0.702
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.719
RBM47 Echinops telfairi ENSETEG00000009194 I 0.739
RBM46 Echinops telfairi ENSETEG00000014902 I 0.734
RBM46 Felis catus ENSFCAG00000009246 I 0.729
RBM47 Felis catus ENSFCAG00000012399 I 0.734
RBM47 Homo sapiens ENSG00000163694 I 0.734
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.702
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.709
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.734