BGIBMGA005213 (Bombyx mori)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIBMGA005213 T54976_0.6 SilkDB (2008-Apr-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.803
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BGIBMGA005213 RRM 1 71

Links

Other RRM family RBPs
Other Bombyx mori RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.718
CG2931 Drosophila melanogaster FBgn0037342 D 0.803
PHUM106890 Pediculus humanus PHUM106890 I 0.831
GE24162 Drosophila yakuba FBgn0241294 I 0.803
GK12952 Drosophila willistoni FBgn0214961 I 0.817
Bm1_40380 Brugia malayi Bm1_40380 I 0.704
GJ22705 Drosophila virilis FBgn0209809 I 0.817
GD19605 Drosophila simulans FBgn0191097 I 0.789
GM10617 Drosophila sechellia FBgn0165563 I 0.803
76581 Helobdella robusta 76581 I 0.718
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.718
AAI29577 Xenopus laevis AAI29577 I 0.718
A2VDB3 Xenopus laevis A2VDB3 I 0.704
Minc13155 Meloidogyne incognita Minc13155 I 0.746
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.746
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.732
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.732
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.704
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.761
GL22151 Drosophila persimilis FBgn0159743 I 0.817
GI23084 Drosophila mojavensis FBgn0145811 I 0.817
GH22277 Drosophila grimshawi FBgn0129737 I 0.817
CpipJ_CPIJ005997 Culex pipiens CpipJ_CPIJ005997 I 0.732
LOAG_04208 Loa loa LOAG_04208 I 0.704
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.746
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.704
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.845
DGIL_AUG5s15230g22t1 Acyrtosiphon pisum DGIL_AUG5s15230g22t1 I 0.789
AAEL010642 Aedes aegypti AAEL010642 I 0.859
AGAP010200 Anopheles gambiae AGAP010200 I 0.873
CPIJ005997 Culex quinquefasciatus CPIJ005997 I 0.732
GG10948 Drosophila erecta FBgn0103251 I 0.803
GF11626 Drosophila ananassae FBgn0088666 I 0.803
GA15528-RA Drosophila pseudoobscura FBgn0075545 I 0.817
AAI29698 Xenopus laevis AAI29698 I 0.704
rbm42 Danio rerio ENSDARG00000039910 I 0.704
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.718
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.704
nasonia_NCBI_hmm320104 Nasonia vitripennis nasonia_NCBI_hmm320104 N 0.732
gw1.1.892.1 Trichoplax adhaerens gw1.1.892.1 N 0.704