CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TGGT1_089620
(
Toxoplasma gondii
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
TGGT1_089620
T60902_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.711
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TGGT1_089620
S1
33
107
PDVEDLVMVKVNRIADLGAYVSLLEYNNMEGMILMSELSKRRFRSVNKLIRVGRHEVVMVLRVDPKKGYIDLSKR
Links
Other
S1
family RBPs
Other
Toxoplasma gondii
RBPs
174 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_06776
Puccinia graminis
PGTG_06776
N
0.000
Genemark.10975_g
Serpula lacrymans
Genemark.10975_g
N
0.000
Genemark.10729_g
Serpula lacrymans
Genemark.10729_g
N
0.000
PHUM519370
Pediculus humanus
PHUM519370
N
0.000
CJA17358
Caenorhabditis japonica
CJA17358
N
0.000
CJA09252
Caenorhabditis japonica
CJA09252
N
0.000
CJA05578
Caenorhabditis japonica
CJA05578
N
0.000
CJA05016
Caenorhabditis japonica
CJA05016
N
0.000
PGTG_16926
Puccinia graminis
PGTG_16926
N
0.000
PGTG_16818
Puccinia graminis
PGTG_16818
N
0.000
PGTG_13838
Puccinia graminis
PGTG_13838
N
0.000
Genemark.4174_g
Serpula lacrymans
Genemark.4174_g
N
0.000