AT5G12440 (Arabidopsis thaliana)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		AT5G12440-TAIR-G T00384_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G12440.1-P CCCH ZF 231 252
AT5G12440.1-P RRM 366 426

Links

Other CCCH ZF,RRM family RBPs
Other Arabidopsis thaliana RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29223.m000023 Ricinus communis 29223.m000023 N 0.000
30169.m006471 Ricinus communis 30169.m006471 N 0.759
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.714
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.711
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.738
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.714
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.711
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.711
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.000
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.738
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.738
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.000
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.000
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.000
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.000
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.747
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.000
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.000
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.000
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.000
fgenesh1_pm.C_scaffold_139000002 Selaginella moellendorfii fgenesh1_pm.C_scaffold_139000002 N 0.000
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.723
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.723
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.723
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.723
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.000
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.711
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.000
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.747
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.726
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.714
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.711
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.711
MDP0000120231 Malus x domestica MDP0000120231 N 0.735
MDP0000120462 Malus x domestica MDP0000120462 N 0.723
MDP0000220601 Malus x domestica MDP0000220601 N 0.702
MDP0000243086 Malus x domestica MDP0000243086 N 0.723
mgf014647m Mimulus guttatus mgf014647m N 0.000
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.711
ppa002413m Prunus persica ppa002413m N 0.735
ppa023263m Prunus persica ppa023263m N 0.735
SB02G043180 Sorghum bicolor Sb02g043180 N 0.711
SB08G001980 Sorghum bicolor Sb08g001980 N 0.000