estExt_fgenesh2_pg.C_80472 (Selaginella moellendorfii)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		estExt_fgenesh2_pg.C_80472 T00900_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_80472 CCCH ZF 205 227
estExt_fgenesh2_pg.C_80472 RRM 318 378

Links

Other CCCH ZF,RRM family RBPs
Other Selaginella moellendorfii RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29223.m000023 Ricinus communis 29223.m000023 N 0.718
30169.m006471 Ricinus communis 30169.m006471 N 0.714
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.726
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.702
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.738
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.702
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.702
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.702
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.714
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.714
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.714
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.702
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.702
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.702
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.702
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.714
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.976
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.810
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.750
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.738
fgenesh1_pm.C_scaffold_139000002 Selaginella moellendorfii fgenesh1_pm.C_scaffold_139000002 N 0.741
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.702
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.702
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.702
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.702
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.714
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.702
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.714
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.702
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.702
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.702
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.702
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.702
MDP0000120231 Malus x domestica MDP0000120231 N 0.750
MDP0000120462 Malus x domestica MDP0000120462 N 0.738
MDP0000220601 Malus x domestica MDP0000220601 N 0.714
MDP0000243086 Malus x domestica MDP0000243086 N 0.714
mgf014647m Mimulus guttatus mgf014647m N 0.714
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.702
ppa002413m Prunus persica ppa002413m N 0.750
ppa023263m Prunus persica ppa023263m N 0.714
SB02G043180 Sorghum bicolor Sb02g043180 N 0.702
SB05G001540 Sorghum bicolor Sb05g001540 N 0.702
SB08G001980 Sorghum bicolor Sb08g001980 N 0.714