gw1.10.611.1 (Lottia gigantea)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		gw1.10.611.1 T07585_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF7
M353_0.6 		Homo sapiens ACGAGAGAY SELEX
Cook et al.(2011)
954_10094314 		0.702
SRSF7
M331_0.6 		Homo sapiens AGACKACGAY SELEX
Cook et al.(2011)
790_10094314 		0.702
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.10.611.1 RRM 4 69
gw1.10.611.1 CCHC ZF 95 112

Links

Other CCHC ZF,RRM family RBPs
Other Lottia gigantea RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL017082 Aedes aegypti AAEL017082 I 0.702
AAH77185 Xenopus laevis AAH77185 I 0.702
AAH77393 Xenopus laevis AAH77393 I 0.702
AGAP008303 Anopheles gambiae AGAP008303 I 0.000
amel4_ncbi_hmm42637 Apis mellifera amel4_ncbi_hmm42637 I 0.726
Ame_R012465 Ailuropoda melanoleuca Ame_R012465 I 0.702
B5FZ53_TAEGU Taeniopygia guttata ENSTGUG00000002095 I 0.000
BGIBMGA010396 Bombyx mori BGIBMGA010396 I 0.726
CPIJ013237 Culex quinquefasciatus CPIJ013237 I 0.702
CpipJ_CPIJ013237 Culex pipiens CpipJ_CPIJ013237 I 0.702
DGIL_AUG5s7527g2t1 Acyrtosiphon pisum DGIL_AUG5s7527g2t1 I 0.738
ENSCAFG00000006272 Canis familiaris ENSCAFG00000006272 I 0.702
ENSCHOG00000002390 Choloepus hoffmanni ENSCHOG00000002390 I 0.000
ENSDARG00000054296 Danio rerio ENSDARG00000054296 I 0.000
ENSGALG00000013825 Gallus gallus ENSGALG00000013825 I 0.000
ENSMEUG00000000773 Macropus eugenii ENSMEUG00000000773 I 0.000
ENSMEUG00000016459 Macropus eugenii ENSMEUG00000016459 I 0.702
ENSMODG00000008669 Monodelphis domestica ENSMODG00000008669 I 0.702
ENSMODG00000023693 Monodelphis domestica ENSMODG00000023693 I 0.000
ENSPPYG00000012480 Pongo pygmaeus ENSPPYG00000012480 I 0.702
ENSRNOG00000025091 Rattus norvegicus ENSRNOG00000025091 I 0.000
ENSRNOG00000033319 Rattus norvegicus ENSRNOG00000033319 I 0.000
estExt_Genewise1.C_1590063 Capitella teleta estExt_Genewise1.C_1590063 I 0.726
e_gw.267.117.1 Branchiostoma floridae e_gw.267.117.1 I 0.000
fgenesh2_pg.scaffold_208000073 Branchiostoma floridae fgenesh2_pg.scaffold_208000073 I 0.000
ISCW006562 Ixodes scapularis ISCW006562 I 0.000
LOC100054033 Equus caballus ENSECAG00000008664 I 0.702
LOC100385878 Callithrix jacchus ENSCJAG00000015185 I 0.702
PHUM241330 Pediculus humanus PHUM241330 I 0.750
PHUM284060 Pediculus humanus PHUM284060 I 0.000
Q5ZMI0_CHICK Gallus gallus ENSGALG00000013819 I 0.000
SFRS7 Taeniopygia guttata ENSTGUG00000002080 I 0.000
Sfrs7 Rattus norvegicus ENSRNOG00000027360 I 0.702
SFRS7_BOVIN Bos taurus ENSBTAG00000014891 I 0.702
Sjc_0048080 Schistosoma japonicum Sjc_0048080 N 0.762
Smp_098890 Schistosoma mansoni Smp_098890 I 0.774
SRSF7 Danio rerio ENSDARG00000035325 I 0.702
SRSF7 Tetraodon nigroviridis ENSTNIG00000014279 I 0.000
SRSF7 Tarsius syrichta ENSTSYG00000012273 I 0.702
SRSF7 Takifugu rubripes ENSTRUG00000010529 I 0.000
SRSF7 Cavia porcellus ENSCPOG00000011785 I 0.702
SRSF7 Tursiops truncatus ENSTTRG00000014324 I 0.000
SRSF7 Vicugna pacos ENSVPAG00000003316 I 0.702
srsf7 Xenopus tropicalis ENSXETG00000025300 I 0.702
SRSF7 Anolis carolinensis ENSACAG00000006082 I 0.702
SRSF7 Meleagris gallopavo ENSMGAG00000007415 I 0.702
SRSF7 Tupaia belangeri ENSTBEG00000004604 I 0.702
SRSF7 Ornithorhynchus anatinus ENSOANG00000004405 I 0.702
Srsf7 Mus musculus ENSMUSG00000024097 I 0.702
SRSF7 Erinaceus europaeus ENSEEUG00000014487 I 0.702
SRSF7 Macaca mulatta ENSMMUG00000011025 I 0.702
SRSF7 Myotis lucifugus ENSMLUG00000015692 I 0.702
SRSF7 Homo sapiens ENSG00000115875 D 0.702
SRSF7 Gasterosteus aculeatus ENSGACG00000012311 I 0.000
SRSF7 Loxodonta africana ENSLAFG00000005666 I 0.702
Srsf7 Dipodomys ordii ENSDORG00000008616 I 0.702
SRSF7 Otolemur garnettii ENSOGAG00000010169 I 0.702
SRSF7 Sus scrofa ENSSSCG00000008484 I 0.702
SRSF7 Oryctolagus cuniculus ENSOCUG00000004087 I 0.702
SRSF7 Pteropus vampyrus ENSPVAG00000012076 I 0.702
SRSF7 Pan troglodytes ENSPTRG00000011851 I 0.702
SRSF7 Dasypus novemcinctus ENSDNOG00000007821 I 0.702
SRSF7 Procavia capensis ENSPCAG00000011348 I 0.702
SRSF7 Oryzias latipes ENSORLG00000000746 I 0.000
SRSF7 Ochotona princeps ENSOPRG00000010234 I 0.702
SRSF7 Gorilla gorilla ENSGGOG00000014620 I 0.702