GRMZM2G151923 (Zea mays)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		GRMZM2G151923 T07612_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G151923_P01 RRM 4 63
GRMZM2G151923_P01 CCHC ZF 87 104
GRMZM2G151923_P02 RRM 4 63
GRMZM2G151923_P02 CCHC ZF 87 104
GRMZM2G151923_P03 RRM 4 63
GRMZM2G151923_P03 CCHC ZF 87 104
GRMZM2G151923_P04 RRM 4 63
GRMZM2G151923_P04 CCHC ZF 87 104
GRMZM2G151923_P05 RRM 4 63
GRMZM2G151923_P05 CCHC ZF 87 104

Links

Other CCHC ZF,RRM family RBPs
Other Zea mays RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28610.m000073 Ricinus communis 28610.m000073 N 0.747
29848.m004475 Ricinus communis 29848.m004475 N 0.785
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.785
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.772
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.873
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.923
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.885
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.846
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.910
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.797
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.709
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.747
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.785
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.772
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.772
e_gw1.12.448.1 Chlorella vulgaris e_gw1.12.448.1 N 0.709
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.808
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.808
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.747
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.759
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.759
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.734
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.885
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.910
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.897
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.734
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.797
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.747
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.734
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.910
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.923
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.923
MDP0000870155 Malus x domestica MDP0000870155 N 0.722
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.759
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.709
mgf005494m Mimulus guttatus mgf005494m N 0.785
mgf014721m Mimulus guttatus mgf014721m N 0.785
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.734
PK15383.1 Cannabis sativa PK15383.1 N 0.772
PK23390.1 Cannabis sativa PK23390.1 N 0.747
ppa012111m Prunus persica ppa012111m N 0.722
ppa012147m Prunus persica ppa012147m N 0.734
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.747
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.897
SB04G035540 Sorghum bicolor Sb04g035540 N 0.910
SB10G005960 Sorghum bicolor Sb10g005960 N 0.987
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.747
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.772
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.785
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.747
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.772