BRADI3G48460 (Brachypodium distachyon)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		BRADI3G48460 T07186_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G48460.2 RRM 4 63
BRADI3G48460.2 CCHC ZF 88 105
BRADI3G48460.3 RRM 4 63
BRADI3G48460.3 CCHC ZF 88 105

Links

Other CCHC ZF,RRM family RBPs
Other Brachypodium distachyon RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.923
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.910
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.910
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.885
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.872
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.872
SB10G005960 Sorghum bicolor Sb10g005960 N 0.859
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.846
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.846
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.846
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.846
SB04G035540 Sorghum bicolor Sb04g035540 N 0.846
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.833
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.833
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.833
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.797
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.797
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.772
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.772
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.759
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.759
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.759
29848.m004475 Ricinus communis 29848.m004475 N 0.759
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.759
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.759
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.759
PK15383.1 Cannabis sativa PK15383.1 N 0.759
mgf005494m Mimulus guttatus mgf005494m N 0.747
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.747
mgf014721m Mimulus guttatus mgf014721m N 0.747
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.747
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.734
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.734
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.734
28610.m000073 Ricinus communis 28610.m000073 N 0.734
ppa012147m Prunus persica ppa012147m N 0.734
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.734
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.722
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.722
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.722
PK23390.1 Cannabis sativa PK23390.1 N 0.722
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.722
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.722
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.709
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.709
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.709