BRADI3G53760 (Brachypodium distachyon)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		BRADI3G53760 T07187_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G53760.1 RRM 4 63
BRADI3G53760.1 CCHC ZF 94 111
BRADI3G53760.3 RRM 4 63
BRADI3G53760.3 CCHC ZF 94 111

Links

Other CCHC ZF,RRM family RBPs
Other Brachypodium distachyon RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.936
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.923
SB10G005960 Sorghum bicolor Sb10g005960 N 0.923
SB04G035540 Sorghum bicolor Sb04g035540 N 0.923
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.910
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.897
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.886
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.885
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.885
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.885
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.872
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.859
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.846
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.846
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.782
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.782
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.772
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.759
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.747
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.747
mgf005494m Mimulus guttatus mgf005494m N 0.747
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.747
29848.m004475 Ricinus communis 29848.m004475 N 0.747
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.747
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.747
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.747
mgf014721m Mimulus guttatus mgf014721m N 0.747
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.734
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.734
PK15383.1 Cannabis sativa PK15383.1 N 0.734
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.734
ppa012147m Prunus persica ppa012147m N 0.722
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.722
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.722
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.722
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.709
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.709
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.709
PK23390.1 Cannabis sativa PK23390.1 N 0.709
e_gw1.12.448.1 Chlorella vulgaris e_gw1.12.448.1 N 0.709
28610.m000073 Ricinus communis 28610.m000073 N 0.709
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.709
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.709
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.709
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.709