fgenesh2_pg.scaffold_196000015 (Branchiostoma floridae)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh2_pg.scaffold_196000015 T21110_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_196000015 KH 85 134

Links

Other KH family RBPs
Other Branchiostoma floridae RBPs

223 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
20359_YOR145C Saccharomyces mikatae 20359_YOR145C N 0.706
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.720
23888_YOR145C Saccharomyces bayanus 23888_YOR145C N 0.720
3712.m00082 Tetrahymena thermophila 3712.m00082 N 0.720
A7THL8_VANPO Vanderwaltozyma polyspora A7THL8_VANPO N 0.740
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.780
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.780
ARB_00984 Arthroderma benhamiae ARB_00984 N 0.700
ATEG_07413 Aspergillus terreus CADATEAG00001505 N 0.700
BC1G_12211 Botrytis cinerea BC1G_12211 N 0.700
BDBG_01721 Blastomyces dermatitidis BDBG_01721 N 0.700
CAGL0K09460g Candida glabrata CAGL0K09460g N 0.740
Cd36_35296 Candida dubliniensis Cd36_35296 N 0.740
CIMG_07268 Coccidioides immitis CIMG_07268 N 0.700
CLUG_01545 Candida lusitaniae CLUG_01545 N 0.740
CPAG_01545 Candida parapsilosis CPAG_01545 N 0.740
CPSG_08784 Coccidioides posadasii CPSG_08784 N 0.700
CTRG_05813 Candida tropicalis CTRG_05813 N 0.740
DEHA0G05258g Debaryomyces hansenii DEHA0G05258g N 0.740
EAT88982.1 Phaeosphaeria nodorum EAT88982.1 N 0.700
EDP42908.1 Malassezia globosa EDP42908.1 N 0.700
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.740
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 N 0.000
estExt_fgenesh5_pg.C_40050 Trichoderma reesei estExt_fgenesh5_pg.C_40050 N 0.000
estExt_Genewise1.C_10689 Thielavia terrestris estExt_Genewise1.C_10689 N 0.720
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.820
estExt_Genewise1Plus.C_10659 Myceliophthora thermophila estExt_Genewise1Plus.C_10659 N 0.740
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.820
estExt_Genewise1Plus.C_430054 Neurospora tetrasperma estExt_Genewise1Plus.C_430054 N 0.000
estExt_Genewise1Plus.C_91132 Trichoderma virens estExt_Genewise1Plus.C_91132 N 0.000
estExt_Genewise1Plus.C_chr_70397 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_70397 N 0.700
estExt_genewise1_human.C_chr_1.20929 Pichia stipitis estExt_genewise1_human.C_chr_1.20929 N 0.740
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.820
e_gw1.18.222.1 Chlorella NC64A e_gw1.18.222.1 N 0.720
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.800
e_gw1.3.1059.1 Mycosphaerella fijiensis e_gw1.3.1059.1 N 0.000
e_gw1.3.2749.1 Cryphonectria parasitica e_gw1.3.2749.1 N 0.000
e_gw1.3.666.1 Neurospora discreta e_gw1.3.666.1 N 0.000
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.840
fgenesh1_pm.C_scaffold_14000035 Trichoderma atroviride fgenesh1_pm.C_scaffold_14000035 N 0.000
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.840
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.880
FGSG_01345 Fusarium graminearum FGSG_01345 N 0.000
FOXG_00036 Fusarium oxysporum FOXG_00036 N 0.000
FVEG_01480 Fusarium verticillioides FVEG_01480 N 0.000
GLRG_03940 Colletotrichum graminicola GLRG_03940 N 0.000
GSTUMT00003923001 Tuber melanosporum GSTUMT00003923001 N 0.740
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.820
HCAG_04100 Histoplasma capsulatum HCAG_04100 N 0.700
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.720
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.720
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.720
LELG_05249 Lodderomyces elongisporus LELG_05249 N 0.740
MCYG_07269 Microsporum canis MCYG_07269 N 0.700
MGYG_04767 Microsporum gypseum MGYG_04767 N 0.700
NCU07956 Neurospora crassa NCU07956 N 0.000
orf19.7618 Candida albicans orf19.7618 N 0.740
PABG_01374 Paracoccidioides brasiliensis PABG_01374 N 0.000
Pc14g01220 Penicillium chrysogenum Pc14g01220 N 0.700
PGUG_02960 Candida guilliermondii PGUG_02960 N 0.720
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.920
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.940
PNO1 Saccharomyces cerevisiae YOR145C N 0.720
PNO1 Ashbya gossypii PNO1 N 0.720
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.920
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.900
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.920
PTRG_02803 Pyrenophora tritici repentis PTRG_02803 N 0.000
rbp28 Schizosaccharomyces pombe SPAC2C4.11c N 0.720
SAKL0G03740g Lachancea kluyveri SAKL0G03740g N 0.740
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.760
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.720
SNOG_03777 Stagonospora nodorum SNOG_03777 N 0.700
SOCG_04140 Schizosaccharomyces octosporus SOCG_04140 N 0.000
SPOG_00402 Schizosaccharomyces cryophilus SPOG_00402 N 0.700
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.740
SS1G_04290 Sclerotinia sclerotiorum SS1G_04290 N 0.700
TEQG_07954 Trichophyton equinum TEQG_07954 N 0.700
TERG_01665 Trichophyton rubrum TERG_01665 N 0.700
TESG_04215 Trichophyton tonsurans TESG_04215 N 0.700
TRV_03730 Trichophyton verrucosum TRV_03730 N 0.700
UREG_07832 Uncinocarpus reesii UREG_07832 N 0.000
YALI0E01122g Yarrowia lipolytica YALI0E01122g N 0.720
ZYRO0D11440g Zygosaccharomyces rouxii ZYRO0D11440g N 0.740