CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNOG_03777
(
Stagonospora nodorum
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
SNOG_03777
T17817_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNOT_03777
KH
187
235
GRAIGRIAGKDGKTKFAIENASRTRVVLADSKIHILGGFKNIHVAREAI
Links
Other
KH
family RBPs
Other
Stagonospora nodorum
RBPs
161 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
EAT88982.1
Phaeosphaeria nodorum
EAT88982.1
N
1.000
SS1G_04290
Sclerotinia sclerotiorum
SS1G_04290
N
0.980
BC1G_12211
Botrytis cinerea
BC1G_12211
N
0.980
MCYG_07269
Microsporum canis
MCYG_07269
N
0.959
Pc14g01220
Penicillium chrysogenum
Pc14g01220
N
0.959
HCAG_04100
Histoplasma capsulatum
HCAG_04100
N
0.959
ARB_00984
Arthroderma benhamiae
ARB_00984
N
0.959
TRV_03730
Trichophyton verrucosum
TRV_03730
N
0.959
TESG_04215
Trichophyton tonsurans
TESG_04215
N
0.959
MGYG_04767
Microsporum gypseum
MGYG_04767
N
0.959
TEQG_07954
Trichophyton equinum
TEQG_07954
N
0.959
TERG_01665
Trichophyton rubrum
TERG_01665
N
0.959
BDBG_01721
Blastomyces dermatitidis
BDBG_01721
N
0.939
PTRG_02803
Pyrenophora tritici repentis
PTRG_02803
N
0.939
YALI0E01122g
Yarrowia lipolytica
YALI0E01122g
N
0.939
PABG_01374
Paracoccidioides brasiliensis
PABG_01374
N
0.939
CIMG_07268
Coccidioides immitis
CIMG_07268
N
0.918
CPSG_08784
Coccidioides posadasii
CPSG_08784
N
0.918
UREG_07832
Uncinocarpus reesii
UREG_07832
N
0.898
estExt_fgenesh1_kg.C_140013
Cochliobolus heterostrophus C5
estExt_fgenesh1_kg.C_140013
N
0.880
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036
Nectria haematococca
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036
N
0.880
FOXG_00036
Fusarium oxysporum
FOXG_00036
N
0.880
FVEG_01480
Fusarium verticillioides
FVEG_01480
N
0.880
FGSG_01345
Fusarium graminearum
FGSG_01345
N
0.880
estExt_Genewise1Plus.C_chr_70397
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_70397
N
0.860
fgenesh1_pm.C_scaffold_14000035
Trichoderma atroviride
fgenesh1_pm.C_scaffold_14000035
N
0.840
e_gw1.3.1059.1
Mycosphaerella fijiensis
e_gw1.3.1059.1
N
0.840
estExt_fgenesh5_pg.C_40050
Trichoderma reesei
estExt_fgenesh5_pg.C_40050
N
0.840
estExt_Genewise1Plus.C_91132
Trichoderma virens
estExt_Genewise1Plus.C_91132
N
0.840
e_gw1.3.2749.1
Cryphonectria parasitica
e_gw1.3.2749.1
N
0.837
GLRG_03940
Colletotrichum graminicola
GLRG_03940
N
0.827
SAKL0G03740g
Lachancea kluyveri
SAKL0G03740g
N
0.820
Cd36_35296
Candida dubliniensis
Cd36_35296
N
0.820
A7THL8_VANPO
Vanderwaltozyma polyspora
A7THL8_VANPO
N
0.820
CAGL0K09460g
Candida glabrata
CAGL0K09460g
N
0.820
CPAG_01545
Candida parapsilosis
CPAG_01545
N
0.820
CLUG_01545
Candida lusitaniae
CLUG_01545
N
0.820
LELG_05249
Lodderomyces elongisporus
LELG_05249
N
0.820
CTRG_05813
Candida tropicalis
CTRG_05813
N
0.820
DEHA0G05258g
Debaryomyces hansenii
DEHA0G05258g
N
0.820
estExt_genewise1_human.C_chr_1.20929
Pichia stipitis
estExt_genewise1_human.C_chr_1.20929
N
0.820
orf19.7618
Candida albicans
orf19.7618
N
0.820
GSTUMT00003923001
Tuber melanosporum
GSTUMT00003923001
N
0.816
23888_YOR145C
Saccharomyces bayanus
23888_YOR145C
N
0.800
Scas_Contig632.19
Saccharomyces castellii
Scas_Contig632.19
N
0.800
20872_YOR145C
Saccharomyces paradoxus
20872_YOR145C
N
0.800
PNO1
Ashbya gossypii
PNO1
N
0.800
ZYRO0D11440g
Zygosaccharomyces rouxii
ZYRO0D11440g
N
0.800
PGUG_02960
Candida guilliermondii
PGUG_02960
N
0.800
PNO1
Saccharomyces cerevisiae
YOR145C
N
0.800
Kwal_18864
Kluyveromyces waltii
Kwal_18864
N
0.800
KLTH0G02574g
Kluyveromyces thermotolerans
KLTH0G02574g
N
0.800
KLLA0C06446g
Kluyveromyces lactis
KLLA0C06446g
N
0.800
Skud_Contig1833.8
Saccharomyces kudriavzevii
Skud_Contig1833.8
N
0.800
SPPG_04498
Spizellomyces punctatus
SPPG_04498
N
0.796
20359_YOR145C
Saccharomyces mikatae
20359_YOR145C
N
0.784
e_gw1.8.261.1
Sporobolomyces roseus
e_gw1.8.261.1
N
0.780
SPOG_00402
Schizosaccharomyces cryophilus
SPOG_00402
N
0.780
fgenesh3_pm.54__15
Postia placenta
fgenesh3_pm.54__15
N
0.780
e_gw1.2.2126.1
Schizophyllum commune
e_gw1.2.2126.1
N
0.780
e_gww2.1.865.1
Phanerochaete chrysosporium
e_gww2.1.865.1
N
0.780
rbp28
Schizosaccharomyces pombe
SPAC2C4.11c
N
0.780
MGG_05136
Magnaporthe oryzae
MGG_05136
N
0.776
Pa_3_1680
Podospora anserina
Pa_3_1680
N
0.776
3712.m00082
Tetrahymena thermophila
3712.m00082
N
0.776
e_gw1.12.287.1
Serpula lacrymans
e_gw1.12.287.1
N
0.760
gw1.1.2472.1
Pleurotus ostreatus
gw1.1.2472.1
N
0.760
pno1
Xenopus tropicalis
ENSXETG00000017349
N
0.760
PNO1_CHICK
Gallus gallus
ENSGALG00000009093
N
0.760
estExt_Genewise1Plus.C_10659
Myceliophthora thermophila
estExt_Genewise1Plus.C_10659
N
0.760
estExt_fgenesh2_kg.C_20130
Agaricus bisporus
estExt_fgenesh2_kg.C_20130
N
0.760
PNO1
Meleagris gallopavo
ENSMGAG00000004514
N
0.760
ACLA_088200
Aspergillus clavatus
CADACLAG00008695
N
0.760
SJAG_03872
Schizosaccharomyces japonicus
SJAG_03872
N
0.760
e_gwh1.2.512.1
Laccaria bicolor
e_gwh1.2.512.1
N
0.760
e_gw1.3.666.1
Neurospora discreta
e_gw1.3.666.1
N
0.755
NCU07956
Neurospora crassa
NCU07956
N
0.755
estExt_Genewise1Plus.C_430054
Neurospora tetrasperma
estExt_Genewise1Plus.C_430054
N
0.755
estExt_Genewise1Plus.C_250095
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_250095
N
0.755
UM03495
Ustilago maydis
UM03495
N
0.755
AMAG_12889
Allomyces macrogynus
AMAG_12889
N
0.740
PMAA_046470
Penicillium marneffei
PMAA_046470
N
0.740
e_gw1.2.756.1
Heterobasidion annosum
e_gw1.2.756.1
N
0.740
PNO1
Taeniopygia guttata
ENSTGUG00000002369
N
0.740
PNO1
Anolis carolinensis
ENSACAG00000001218
N
0.740
estExt_Genewise1.C_10689
Thielavia terrestris
estExt_Genewise1.C_10689
N
0.740
estExt_Genewise1Plus.C_10658
Mucor circinelloides
estExt_Genewise1Plus.C_10658
N
0.740
AMAG_14219
Allomyces macrogynus
AMAG_14219
N
0.740
RO3G_00885
Rhizopus oryzae
RO3G_00885
N
0.740
SOCG_04140
Schizosaccharomyces octosporus
SOCG_04140
N
0.740
ATEG_07413
Aspergillus terreus
CADATEAG00001505
N
0.740
RO3G_05288
Rhizopus oryzae
RO3G_05288
N
0.740
GP3.070330
Batrachochytrium dendrobatidis
GP3.070330
N
0.735
AFUA_6G06430
Aspergillus fumigatus
CADAFUAG00001979
N
0.720
PNO1
Loxodonta africana
ENSLAFG00000000046
N
0.720
SPRG_02415
Saprolegnia parasitica
SPRG_02415
N
0.720
Q7YRC8_MACMU
Macaca mulatta
ENSMMUG00000017461
N
0.720
PNO1
Ornithorhynchus anatinus
ENSOANG00000008388
N
0.720
PNO1
Myotis lucifugus
ENSMLUG00000010850
N
0.720
XP_001202155.1
Strongylocentrotus purpuratus
XP_001202155.1
N
0.720
PNO1
Microcebus murinus
ENSMICG00000010897
N
0.720
PNO1
Canis familiaris
ENSCAFG00000003256
N
0.720
XP_791733.2
Strongylocentrotus purpuratus
XP_791733.2
N
0.720
AAQ24169
Xenopus laevis
AAQ24169
N
0.720
Q8AVH4
Xenopus laevis
Q8AVH4
N
0.720
NFIA_052070
Neosartorya fischeri
CADNFIAG00004473
N
0.720
ENSOCUG00000006100
Oryctolagus cuniculus
ENSOCUG00000006100
N
0.720
AAH42279
Xenopus laevis
AAH42279
N
0.720
PNO1
Monodelphis domestica
ENSMODG00000003567
N
0.720
XP_002162789.1
Hydra magnipapillata
XP_002162789.1
N
0.720
XP_798188.2
Strongylocentrotus purpuratus
XP_798188.2
N
0.720
PNO1_BOVIN
Bos taurus
ENSBTAG00000010604
N
0.720
XM_001095777.1
Macaca mulatta
ENSMMUG00000030357
N
0.720
XP_001202160.1
Strongylocentrotus purpuratus
XP_001202160.1
N
0.720
Ame_R013855
Ailuropoda melanoleuca
Ame_R013855
N
0.720
pno1
Danio rerio
ENSDARG00000008502
N
0.720
estExt_Genewise1Plus.C_600117
Volvox carteri
estExt_Genewise1Plus.C_600117
N
0.720
PNO1
Cavia porcellus
ENSCPOG00000010130
N
0.720
fgenesh1_pm.C_scaffold_5000030
Phytophthora ramorum
fgenesh1_pm.C_scaffold_5000030
N
0.720
ENSOCUG00000022236
Oryctolagus cuniculus
ENSOCUG00000022236
N
0.720
PTTG_01898
Puccinia triticina
PTTG_01898
N
0.720
estExt_Genewise1.C_260084
Melampsora laricis populina
estExt_Genewise1.C_260084
N
0.720
Pno1
Dipodomys ordii
ENSDORG00000006867
N
0.720
Chlre2_kg.scaffold_20000177
Chlamydomonas reinhardtii
Chlre2_kg.scaffold_20000177
N
0.720
PNO1
Vicugna pacos
ENSVPAG00000012083
N
0.720
PNO1
Homo sapiens
ENSG00000115946
N
0.720
PNO1
Erinaceus europaeus
ENSEEUG00000009611
N
0.720
LOC100061904
Equus caballus
ENSECAG00000011263
N
0.720
s_468317
Phytophthora sojae
s_468317
N
0.720
PITG_01680
Phytophthora infestans
PITG_01680
N
0.720
PNO1
Procavia capensis
ENSPCAG00000016146
N
0.720
EDP42908.1
Malassezia globosa
EDP42908.1
N
0.720
ENSPPYG00000012353
Pongo pygmaeus
ENSPPYG00000012353
N
0.720
PNO1
Tursiops truncatus
ENSTTRG00000014002
N
0.720
PNO1
Gorilla gorilla
ENSGGOG00000009158
N
0.720
PNO1
Ochotona princeps
ENSOPRG00000009643
N
0.720
Q6VBQ6_ORYLA
Oryzias latipes
ENSORLG00000002371
N
0.720
LOC100389955
Callithrix jacchus
ENSCJAG00000006564
N
0.720
PNO1
Pan troglodytes
ENSPTRG00000011999
N
0.720
Pno1
Rattus norvegicus
ENSRNOG00000005524
N
0.720
PNO1
Pteropus vampyrus
ENSPVAG00000012695
N
0.720
PNO1
Sus scrofa
ENSSSCG00000008352
N
0.720
PNO1
Macropus eugenii
ENSMEUG00000004504
N
0.720
fgenesh_newKGs_pm.139__21
Emiliania huxleyi
fgenesh_newKGs_pm.139__21
N
0.714
EFA79428.1
Polysphondylium pallidum
EFA79428.1
N
0.714
PPA25260
Pristionchus pacificus
PPA25260
N
0.714
AFLA_037860
Aspergillus flavus
CADAFLAG00003159
N
0.706
AO090003000014
Aspergillus oryzae
CADAORAG00000701
N
0.706
estExt_fgenesh1_pg.C_190237
Phytophthora capsici
estExt_fgenesh1_pg.C_190237
N
0.700
fgenesh2_pg.scaffold_196000015
Branchiostoma floridae
fgenesh2_pg.scaffold_196000015
N
0.700
fgenesh2_pm.scaffold_78000001
Branchiostoma floridae
fgenesh2_pm.scaffold_78000001
N
0.700
PNO1
Tetraodon nigroviridis
ENSTNIG00000009825
N
0.700
PNO1
Takifugu rubripes
ENSTRUG00000012470
N
0.700
PHUM356890
Pediculus humanus
PHUM356890
N
0.700
fgeneshTA2_pg.C_scaffold_14000176
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_14000176
N
0.700
fgeneshCV_pg.C_scaffold_11000142
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_11000142
N
0.700
ANIA_05785
Aspergillus nidulans
CADANIAG00003265
N
0.700
Pno1
Mus musculus
ENSMUSG00000020116
N
0.700
LjSGA_017760.2
Lotus japonicus
LjSGA_017760.2
N
0.700
Genemark1.5719_g
Coccomyxa C 169
Genemark1.5719_g
N
0.700
amel4_ncbi_hmm14037
Apis mellifera
amel4_ncbi_hmm14037
N
0.700