CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.18.222.1
(
Chlorella NC64A
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
e_gw1.18.222.1
T20750_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.18.222.1
KH
142
190
ARCIGRMAGRNGKTKFTIENATRTRIVLADTRIHILGSFQNIRAARDSI
Links
Other
KH
family RBPs
Other
Chlorella NC64A
RBPs
132 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Chlre2_kg.scaffold_20000177
Chlamydomonas reinhardtii
Chlre2_kg.scaffold_20000177
N
0.840
estExt_Genewise1Plus.C_600117
Volvox carteri
estExt_Genewise1Plus.C_600117
N
0.840
e_gw1.13.100.1
Volvox carteri
e_gw1.13.100.1
N
0.796
e_gww2.1.865.1
Phanerochaete chrysosporium
e_gww2.1.865.1
N
0.780
estExt_Genewise1Plus.C_10658
Mucor circinelloides
estExt_Genewise1Plus.C_10658
N
0.780
fgenesh3_pm.54__15
Postia placenta
fgenesh3_pm.54__15
N
0.780
PNO1
Taeniopygia guttata
ENSTGUG00000002369
N
0.760
AMAG_12889
Allomyces macrogynus
AMAG_12889
N
0.760
GSPATP00021981001
Paramecium tetraurelia
GSPATP00021981001
N
0.760
fgeneshCV_pg.C_scaffold_11000142
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_11000142
N
0.760
e_gw1.12.287.1
Serpula lacrymans
e_gw1.12.287.1
N
0.760
Genemark1.5719_g
Coccomyxa C 169
Genemark1.5719_g
N
0.760
GSPATP00020703001
Paramecium tetraurelia
GSPATP00020703001
N
0.760
AMAG_14219
Allomyces macrogynus
AMAG_14219
N
0.760
gw1.1.2472.1
Pleurotus ostreatus
gw1.1.2472.1
N
0.760
RO3G_00885
Rhizopus oryzae
RO3G_00885
N
0.760
e_gw1.7.528.1
Ostreococcus RCC809
e_gw1.7.528.1
N
0.760
e_gwEuk.7.409.1
Ostreococcus lucimarinus
e_gwEuk.7.409.1
N
0.760
RO3G_05288
Rhizopus oryzae
RO3G_05288
N
0.760
estExt_Genewise1Plus.C_250095
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_250095
N
0.755
pno1
Danio rerio
ENSDARG00000008502
N
0.740
PNO1_CHICK
Gallus gallus
ENSGALG00000009093
N
0.740
PNO1
Meleagris gallopavo
ENSMGAG00000004514
N
0.740
estExt_fgenesh2_kg.C_20130
Agaricus bisporus
estExt_fgenesh2_kg.C_20130
N
0.740
nasonia_NCBI_hmm120183
Nasonia vitripennis
nasonia_NCBI_hmm120183
N
0.740
XP_001202160.1
Strongylocentrotus purpuratus
XP_001202160.1
N
0.740
Q6VBQ6_ORYLA
Oryzias latipes
ENSORLG00000002371
N
0.740
e_gw1.2.756.1
Heterobasidion annosum
e_gw1.2.756.1
N
0.740
XP_798188.2
Strongylocentrotus purpuratus
XP_798188.2
N
0.740
XP_791733.2
Strongylocentrotus purpuratus
XP_791733.2
N
0.740
e_gw1.2.2126.1
Schizophyllum commune
e_gw1.2.2126.1
N
0.740
pno1
Xenopus tropicalis
ENSXETG00000017349
N
0.740
XP_001202155.1
Strongylocentrotus purpuratus
XP_001202155.1
N
0.740
0700010277
Ostreococcus tauri
0700010277
N
0.740
e_gwh1.2.512.1
Laccaria bicolor
e_gwh1.2.512.1
N
0.740
pno1
Dictyostelium discoideum
DDB_G0287557
N
0.735
GID1.0042265
Dictyostelium purpureum
GID1.0042265
N
0.735
PNO1_IXOSC
Ixodes scapularis
ISCW023560
N
0.735
CNBG_1323
Cryptococcus neoformans
CNBG_1323
N
0.735
EFA79428.1
Polysphondylium pallidum
EFA79428.1
N
0.735
LOC100389955
Callithrix jacchus
ENSCJAG00000006564
N
0.720
ENSCSAVG00000001303
Ciona savignyi
ENSCSAVG00000001303
N
0.720
PNO1
Cavia porcellus
ENSCPOG00000010130
N
0.720
ENSCING00000009577
Ciona intestinalis
ENSCING00000009577
N
0.720
PNO1_BOVIN
Bos taurus
ENSBTAG00000010604
N
0.720
PNO1
Ochotona princeps
ENSOPRG00000009643
N
0.720
fgenesh1_pg.scaffold_18000119
Nematostella vectensis
fgenesh1_pg.scaffold_18000119
N
0.720
ENSOCUG00000022236
Oryctolagus cuniculus
ENSOCUG00000022236
N
0.720
ENSOCUG00000006100
Oryctolagus cuniculus
ENSOCUG00000006100
N
0.720
PNO1
Anolis carolinensis
ENSACAG00000001218
N
0.720
PNO1
Canis familiaris
ENSCAFG00000003256
N
0.720
LOC100061904
Equus caballus
ENSECAG00000011263
N
0.720
PNO1
Microcebus murinus
ENSMICG00000010897
N
0.720
e_gw1.4.614.1
Micromonas pusilla
e_gw1.4.614.1
N
0.720
PNO1
Myotis lucifugus
ENSMLUG00000010850
N
0.720
Q7YRC8_MACMU
Macaca mulatta
ENSMMUG00000017461
N
0.720
PNO1
Monodelphis domestica
ENSMODG00000003567
N
0.720
XM_001095777.1
Macaca mulatta
ENSMMUG00000030357
N
0.720
PNO1
Macropus eugenii
ENSMEUG00000004504
N
0.720
PNO1
Loxodonta africana
ENSLAFG00000000046
N
0.720
PNO1
Erinaceus europaeus
ENSEEUG00000009611
N
0.720
cassava30594.valid.m1
Manihot esculenta
cassava30594.valid.m1
N
0.720
PNO1
Homo sapiens
ENSG00000115946
N
0.720
PNO1
Ornithorhynchus anatinus
ENSOANG00000008388
N
0.720
PNO1
Gorilla gorilla
ENSGGOG00000009158
N
0.720
Pno1
Dipodomys ordii
ENSDORG00000006867
N
0.720
PNO1
Procavia capensis
ENSPCAG00000016146
N
0.720
Pno1
Mus musculus
ENSMUSG00000020116
N
0.720
XP_002162789.1
Hydra magnipapillata
XP_002162789.1
N
0.720
fgenesh2_pg.scaffold_196000015
Branchiostoma floridae
fgenesh2_pg.scaffold_196000015
N
0.720
28525.m000262
Ricinus communis
28525.m000262
N
0.720
PNO1
Takifugu rubripes
ENSTRUG00000012470
N
0.720
PNO1
Tursiops truncatus
ENSTTRG00000014002
N
0.720
B9N5M8_POPTR
Populus trichocarpa
POPTR_0011s16880
N
0.720
B9GHH7_POPTR
Populus trichocarpa
POPTR_0001s47320
N
0.720
PNO1
Vicugna pacos
ENSVPAG00000012083
N
0.720
PNO1
Sus scrofa
ENSSSCG00000008352
N
0.720
PNO1
Tetraodon nigroviridis
ENSTNIG00000009825
N
0.720
fgeneshTA2_pg.C_scaffold_14000176
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_14000176
N
0.720
ENSPPYG00000012353
Pongo pygmaeus
ENSPPYG00000012353
N
0.720
e_gw1.15.315.1
Tremella mesenterica
e_gw1.15.315.1
N
0.720
PNO1
Pan troglodytes
ENSPTRG00000011999
N
0.720
Ame_R013855
Ailuropoda melanoleuca
Ame_R013855
N
0.720
Pno1
Rattus norvegicus
ENSRNOG00000005524
N
0.720
fgenesh2_pm.scaffold_78000001
Branchiostoma floridae
fgenesh2_pm.scaffold_78000001
N
0.720
PNO1
Pteropus vampyrus
ENSPVAG00000012695
N
0.720
TGGT1_015210
Toxoplasma gondii
TGGT1_015210
N
0.714
LmxM34.3540
Leishmania mexicana
LmxM34.3540
N
0.714
NCLIV_012590
Neospora caninum
NCLIV_012590
N
0.714
TGVEG_087040
Toxoplasma gondii
TGVEG_087040
N
0.714
MGG_05136
Magnaporthe oryzae
MGG_05136
N
0.714
TvY486_0905560
Trypanosoma vivax
TvY486_0905560
N
0.714
TGME49_020490
Toxoplasma gondii
TGME49_020490
N
0.714
Cucsa.201760
Cucumis sativus
Cucsa.201760
N
0.700
cassava7030.valid.m1
Manihot esculenta
cassava7030.valid.m1
N
0.700
Cucsa.041830
Cucumis sativus
Cucsa.041830
N
0.700
PNO1
Saccharomyces cerevisiae
YOR145C
N
0.700
PTTG_01898
Puccinia triticina
PTTG_01898
N
0.700
EDP42908.1
Malassezia globosa
EDP42908.1
N
0.700
20872_YOR145C
Saccharomyces paradoxus
20872_YOR145C
N
0.700
Skud_Contig1833.8
Saccharomyces kudriavzevii
Skud_Contig1833.8
N
0.700
KLLA0C06446g
Kluyveromyces lactis
KLLA0C06446g
N
0.700
KLTH0G02574g
Kluyveromyces thermotolerans
KLTH0G02574g
N
0.700
MDP0000120063
Malus x domestica
MDP0000120063
N
0.700
Kwal_18864
Kluyveromyces waltii
Kwal_18864
N
0.700
Scas_Contig632.19
Saccharomyces castellii
Scas_Contig632.19
N
0.700
Medtr3g080390
Medicago truncatula
Medtr3g080390
N
0.700
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036
Nectria haematococca
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036
N
0.700
estExt_fgenesh1_kg.C_140013
Cochliobolus heterostrophus C5
estExt_fgenesh1_kg.C_140013
N
0.700
e_gw1.226.39.1
Physcomitrella patens
e_gw1.226.39.1
N
0.700
estExt_Genewise1.C_260084
Melampsora laricis populina
estExt_Genewise1.C_260084
N
0.700
estExt_Genewise1.C_5820041
Capitella teleta
estExt_Genewise1.C_5820041
N
0.700
s_468317
Phytophthora sojae
s_468317
N
0.700
fgenesh1_pm.C_scaffold_5000030
Phytophthora ramorum
fgenesh1_pm.C_scaffold_5000030
N
0.700
MDP0000136407
Malus x domestica
MDP0000136407
N
0.700
MDP0000265633
Malus x domestica
MDP0000265633
N
0.700
PTSG_04415
Salpingoeca rosetta
PTSG_04415
N
0.700
PITG_01680
Phytophthora infestans
PITG_01680
N
0.700
FVEG_01480
Fusarium verticillioides
FVEG_01480
N
0.700
SPRG_02415
Saprolegnia parasitica
SPRG_02415
N
0.700
PK08146.1
Cannabis sativa
PK08146.1
N
0.700
DGIL_AUG5s4501g8t1
Acyrtosiphon pisum
DGIL_AUG5s4501g8t1
N
0.700
amel4_ncbi_hmm14037
Apis mellifera
amel4_ncbi_hmm14037
N
0.700
FOXG_00036
Fusarium oxysporum
FOXG_00036
N
0.700
FGSG_01345
Fusarium graminearum
FGSG_01345
N
0.700
ppa009897m
Prunus persica
ppa009897m
N
0.700
MDP0000754021
Malus x domestica
MDP0000754021
N
0.700
ppa011086m
Prunus persica
ppa011086m
N
0.700
AAH42279
Xenopus laevis
AAH42279
N
0.700
Q8AVH4
Xenopus laevis
Q8AVH4
N
0.700
AAQ24169
Xenopus laevis
AAQ24169
N
0.700
PNO1
Gasterosteus aculeatus
ENSGACG00000012047
N
0.700